Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01580 ATGTCTTCTGGGGCTCGATTGCTTGTCTTGGATTTTGCCCTCTCTTTTATGTGGTTATGGTCGGGGGTTCTCGTTAAGATCTTTGTTTTTGGGATATTGGGGTTCGGAAATGATCTGATTACTGAGTTTGTCAAGACTGTCGTTTCGATTCTCAACATGTTTTTTTTTGCGTTCTTGGTGAAAATTTCAAAAGGGGCTGCTTATAATCCTCTTAGCATCTTGTCTGCTGCTTTTTCTGGGGATTTCAGCAGCTTTCTCTTCACAGTTGGTGCCAGAATCCCTGCTCAGGTAATGGGAGCTATTACTGCTGTTAGGCTGATTATCCATACATTTCCCGAAGCAGGACGAGGGCCCCGTTTAAACGTTGGCATCCATCATGGAGCTTTGACAGAAGGATTGTTAACGTTCGCCATTGTATTTATCTCACTTGGACTTTCAAGGAAAATCGATGGAAATTTCTTCATGAAGACTTGGATCTCAAGTTTATCCAAGTTAACTCTTCATATTCTCGGTTCCGACTTAACTGGTGGCTGTATGAACCCTGCATCTGTAATGGGATGGGCGTATGCTCGTGGGGAACATATAACGATCGAACATATTCTTGTATACTGGATCGCTCCAATTCAAGGAACTATAGTAGCAGTATTGACGTTTAAGTTACTATTTCGACAATCGAAAGAGGAGAAAGTAAATATGAAGAAGAAATCAGAATAG 714 41.46 MSSGARLLVLDFALSFMWLWSGVLVKIFVFGILGFGNDLITEFVKTVVSILNMFFFAFLVKISKGAAYNPLSILSAAFSGDFSSFLFTVGARIPAQVMGAITAVRLIIHTFPEAGRGPRLNVGIHHGALTEGLLTFAIVFISLGLSRKIDGNFFMKTWISSLSKLTLHILGSDLTGGCMNPASVMGWAYARGEHITIEHILVYWIAPIQGTIVAVLTFKLLFRQSKEEKVNMKKKSE 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31273532 31277741 - ClCG10G016560.1 Cla10g01580 283239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01580 237 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01580 237 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01580 237 PRINTS Major intrinsic protein family signature 130 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01580 237 PRINTS Major intrinsic protein family signature 161 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01580 237 PRINTS Major intrinsic protein family signature 201 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01580 237 Pfam Major intrinsic protein 52 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01580 237 Gene3D Glycerol uptake facilitator protein. 3 236 IPR023271 -
Cla10g01580 237 PANTHER AQUAPORIN SIP2-1-RELATED 4 237 - -
Cla10g01580 237 PANTHER AQUAPORIN SIP2-1-RELATED 4 237 IPR044226 GO:0015267
Cla10g01580 237 SUPERFAMILY Aquaporin-like 6 235 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00532 Cla-Chr4:18897371 Cla10g01580 Cla-Chr10:31273532 8.06E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01580 K09875 - csv:101214379 427.943