Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01589 ATGGAGGTTTTACAGGCCCTCGATTCTCAGGTTCTCATCGGTTTAGCAGCCGCCTTGATTGCCATTGTTGCTGGTGCTGTTTTCCTCTTTTCCTCCAGAAAACCCGCATCCAGAGCCTGCTTGGATCCTGAGAAGTTTAAGGAGTTTAAGCTTGTTAAGCGTACTAAGCTGAGCCACAATGTGGCGAAGTTCACTTTTATACTTCCCAAGCCCGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGAAAGGATGGCCAAGGTGAAGAAGTTATTAAATCTTACACCCCAACTACTTTGGATTCTGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGAGAAATGCGCATTGGGGACTATCTTGCTGTAAAGGGACCAAAGGGACGTTTCAAGTACCAACCTGGTCAAGTTCATGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGGGCTATATTAGAGAACCCGAATGACAAAACAAAGGTTCACCTTATTTATGCCAATGTTACATTAGAAGATATTCTATTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAAATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGCGGCGTTGGCTTTGTGTCCAAGGAAATGATCAAAGCACATTGTCCTGCACCAGCCGCTGACATTAAGATTTTACGGTGCGGTCCACCCCCAATGAACAAGGCCATGGGTGACCACCTTGATGCTCTTGGATATTCAGCTGAAATGCAGTTTCAATTCTAA 843 44.37 MEVLQALDSQVLIGLAAALIAIVAGAVFLFSSRKPASRACLDPEKFKEFKLVKRTKLSHNVAKFTFILPKPDSILGLPIGQHLSCRGKDGQGEEVIKSYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRIGDYLAVKGPKGRFKYQPGQVHAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKILRCGPPPMNKAMGDHLDALGYSAEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31371780 31377207 + ClCG10G016650.2 Cla10g01589 283248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01589 280 Gene3D - 139 280 IPR039261 -
Cla10g01589 280 CDD cyt_b5_reduct_like 49 280 - -
Cla10g01589 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Cla10g01589 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 280 IPR001834 GO:0016491
Cla10g01589 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491
Cla10g01589 280 Gene3D Translation factors 36 138 - -
Cla10g01589 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 280 - -
Cla10g01589 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491
Cla10g01589 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cla10g01589 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cla10g01589 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cla10g01589 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cla10g01589 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cla10g01589 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Cla10g01589 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Cla10g01589 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491
Cla10g01589 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491
Cla10g01589 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491
Cla10g01589 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 275 IPR039261 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02350 Cla-Chr2:38558643 Cla10g01589 Cla-Chr10:31371780 1.46E-144 dispersed
Cla04g00515 Cla-Chr4:18630609 Cla10g01589 Cla-Chr10:31371780 1.92E-140 dispersed
Cla10g01589 Cla-Chr10:31371780 Cla11g00264 Cla-Chr11:3072977 6.69E-66 dispersed
Cla10g01589 Cla-Chr10:31371780 Cla03g00880 Cla-Chr3:12117206 6.35E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01589 K00326 - csv:101212931 529.635