Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01611 ATGTATCATGCTAAGAAATTTTCAACTGCGAGCTTAGTTCCACACAAATCTCAAGGTGCTGAACAAGGTGCGAGTGTTGCGGTTCTTGGTGGCTCTACAGCCAAAAGTCCAATGCCACCTGGAGGAGGTGGAAAACAACGCTTGCGATGGACATCAGATCTTCATGACCGTTTCGTTGATGCCATCACACAACTTGGTGGACCAGATAGGGCAACTCCGAAAGGTGTTTTAAGAGTGATGGGGGTACCTGGTCTTACCATATATCATGTCAAAAGCCATTTACAGAAGTATCGACTTGCAAAGTATTTGCCAGAATCTCCAGCAGATGGTTCTAAGGATGAGAAGAGAAGCTCAGAGAGTCTCTCTGGAACAGATTCCTCTTCGGGCCTGCAAATCAACGAGGCATTGAGGATGCAAATGGAGGTTCAGAAACGTCTTCAAGAACAGCTCGAGGTTTGGCCTCCCTCATCATTTACTACTATTCCAATTTTCATTGAAGGCATCAATGAGTTCGATGAGAAATTTAGTTCAGAAGCGTGTTACGTAGAAGTAACCCAGAAGATAAACCTCACAATACAAGTTCAGAGGCAATTACAAATGAGAATAGAAGCCCAGGCGAAATATTTGCAGAAGATCATCGAGGAGCAACAGAAACTAGGCGGTGAATCAAAAGACTCCGAGGTGGTGGCCTCAGCTGAGGATAATAAGCAAAAGACTTGCCAGTCTGAGTCATACGGTGATGTGTCTGCAGGACCTTCATCTCCCCGAAAGAAACAACGCATCGATCATGGATCAACAGAGGATTCTGCCCCATCTCCACCTATTAATCTACCTTAA 837 44.92 MYHAKKFSTASLVPHKSQGAEQGASVAVLGGSTAKSPMPPGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGSKDEKRSSESLSGTDSSSGLQINEALRMQMEVQKRLQEQLEVWPPSSFTTIPIFIEGINEFDEKFSSEACYVEVTQKINLTIQVQRQLQMRIEAQAKYLQKIIEEQQKLGGESKDSEVVASAEDNKQKTCQSESYGDVSAGPSSPRKKQRIDHGSTEDSAPSPPINLP 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31544836 31551730 - ClCG10G016880.2 Cla10g01611 283270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01611 278 MobiDBLite consensus disorder prediction 233 249 - -
Cla10g01611 278 Pfam MYB-CC type transfactor, LHEQLE motif 182 218 IPR025756 -
Cla10g01611 278 Pfam MYB-CC type transfactor, LHEQLE motif 130 152 IPR025756 -
Cla10g01611 278 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Cla10g01611 278 MobiDBLite consensus disorder prediction 104 130 - -
Cla10g01611 278 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Cla10g01611 278 MobiDBLite consensus disorder prediction 1 23 - -
Cla10g01611 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 183 267 IPR044848 GO:0003700
Cla10g01611 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 152 IPR044848 GO:0003700
Cla10g01611 278 MobiDBLite consensus disorder prediction 220 278 - -
Cla10g01611 278 PANTHER OS05G0491500 PROTEIN 2 152 - -
Cla10g01611 278 Gene3D - 44 103 - -
Cla10g01611 278 PANTHER OS05G0491500 PROTEIN 183 267 - -
Cla10g01611 278 SUPERFAMILY Homeodomain-like 45 99 IPR009057 -
Cla10g01611 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 102 IPR017930 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00521 Cla10g01611 CCT
Cla04g00521 Cla10g01611 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02050 Cla-Chr1:35006659 Cla10g01611 Cla-Chr10:31544836 3.92E-65 dispersed
Cla07g00121 Cla-Chr7:1402866 Cla10g01611 Cla-Chr10:31544836 3.28E-41 dispersed
Cla10g01611 Cla-Chr10:31544836 Cla11g00689 Cla-Chr11:8061773 5.38E-37 dispersed
Cla10g01611 Cla-Chr10:31544836 Cla03g00927 Cla-Chr3:15190181 1.95E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61917 PF00249 Myb_DNA-binding 2.70E-06 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01611 - - csv:101210085 434.106