Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01629 ATGGAGGAAGAACAAGCTCTCTTCTTCGTTCTCTCTACTCGCACTCGCATTTCTCTCAATGAAGGAAGCATGTTTTGTGGTTTAGAGCTAAAGCCTATATCGTCTTGGGGAAATTTCTTCTTTACATTTGACTGTCCTTTGGAACCAGCCATGAATAACTTAACTGTGGAGACGGAAGATGTCTTTTCCAGCTTGCTTGAGCTTGCTGCGAATGATGACATTGATGCCTTCAAGAGATCAATTGAGCGCGACCCTTCTGGTATTGATGAAATTGGTTTATGGTATGGCCGCTTACGTGGCTCGAAGCAAATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCACTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAATCACGCCGTCGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGATATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGACCCTAATATGGTTGATGGGAAAGGACATCGACCTGTCGATGTGATCGTTGCGCCCTTAAGGCATGGCGAGCTTAAATCAACACTTACAGAACTTCTTAAGACAAACGGTTTGTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCGCATTCTCCTCGCCCTTCATCTCCTCTGAATGTCCCCTCATCAGCATCAGAGTTAGTTTCTTCTCCAACAAAGTCGAAACTAAGTGAGTTTCCAATGTTTTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCCAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCCTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGCGAATATGCTCATGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGAAGAGTCTGCTTTTTTGCACACACCACTGAGGAACTGCGCCCTCTGTATGTCTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGCACTTCCGGGGCTTCTGCCATGGATTATGCTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCACTCGTCCGTGGCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTCTGAGTGCAAGAGACATGCCTGTAGAGGATTTTGATTATCTGAGTGATTTTGATATGCAACAACAGCAGCTGCTTAACGACTTGAATTGTCTTTCTCAACCACCGTTGAGTTCAAATTCATTGAACCATTCTGGTCGGCTGAAAACTATGACCCCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAACAACAGACTATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGTGTTCCGTCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCAGTCGGCTCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAGTTTCGCAGCCTCAGCTCGCGTGAACTCGGTGCTAATTCTGCCTCTATTGTTGGTTCTCCTGCAAATTCTTGGTCCAAATGGGGACCTTCAAATGGAAGACCTGATTGGGCAGTCAATGCGGATGAAATGGGTAAGCTTCGGCGATCATCGTCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAATTTGGGTGGCGATAGTTTTGTATCTTCTGGTGAGAGTTCTAACATGAACTCGCAAATGGAGGCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTTGATCATCTCGTCGCGCAACAGAACTGA 2259 46.22 MEEEQALFFVLSTRTRISLNEGSMFCGLELKPISSWGNFFFTFDCPLEPAMNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSTEVLKLILSLSCADVNHAVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDGKGHRPVDVIVAPLRHGELKSTLTELLKTNGLSGDGNLDVLTGARNSHSPRPSSPLNVPSSASELVSSPTKSKLSEFPMFSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYATVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNHSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQTMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGANSASIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSSGESSNMNSQMEAVDHAALGAWLEQMQLDHLVAQQN 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31945774 31949527 + ClCG10G017110.1 Cla10g01629 283288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01629 752 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 327 347 IPR000571 GO:0046872
Cla10g01629 752 SMART c3hfinal6 357 380 IPR000571 GO:0046872
Cla10g01629 752 SMART c3hfinal6 322 348 IPR000571 GO:0046872
Cla10g01629 752 ProSiteProfiles Ankyrin repeat region circular profile. 142 176 - -
Cla10g01629 752 Gene3D - 59 201 IPR036770 -
Cla10g01629 752 MobiDBLite consensus disorder prediction 697 721 - -
Cla10g01629 752 SUPERFAMILY Ankyrin repeat 56 187 IPR036770 -
Cla10g01629 752 ProSiteProfiles Ankyrin repeat profile. 142 177 IPR002110 GO:0005515
Cla10g01629 752 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 51 749 - -
Cla10g01629 752 MobiDBLite consensus disorder prediction 216 245 - -
Cla10g01629 752 SMART ANK_2a 142 174 IPR002110 GO:0005515
Cla10g01629 752 SMART ANK_2a 107 137 IPR002110 GO:0005515
Cla10g01629 752 Pfam Ankyrin repeats (3 copies) 105 176 IPR002110 GO:0005515
Cla10g01629 752 MobiDBLite consensus disorder prediction 215 245 - -
Cla10g01629 752 PANTHER UNKEMPT FAMILY MEMBER 51 749 IPR045234 -
Cla10g01629 752 Gene3D - 322 385 - -
Cla10g01629 752 ProSiteProfiles Zinc finger C3H1-type profile. 327 349 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00238 Cla-Chr7:2631716 Cla10g01629 Cla-Chr10:31945774 2.03E-57 dispersed
Cla07g00403 Cla-Chr7:5224660 Cla10g01629 Cla-Chr10:31945774 3.35E-162 dispersed
Cla07g01625 Cla-Chr7:33584932 Cla10g01629 Cla-Chr10:31945774 2.36E-10 dispersed
Cla10g01174 Cla-Chr10:26344622 Cla10g01629 Cla-Chr10:31945774 0 dispersed
Cla10g01629 Cla-Chr10:31945774 Cla11g00173 Cla-Chr11:2031284 2.13E-48 dispersed
Cla10g01629 Cla-Chr10:31945774 Cla02g01906 Cla-Chr2:34204310 9.69E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61920 PF12796 Ank_2 2.00E-09 CL0465 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01629 - - csv:101207646 1301.19