Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01643 ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACCACTACCAATTTCCCCCACCACCACCACCCTTCTTCTTCTTCTTCTTCTTCAAACCCTTTTCCTCCTCCTCCTCCTCCTCCTCCCAATTTCTTCCCCACTTTCCACCACCCTCCGCCGCCATCCTCTCCACCGCTCCGCCAAGCTCTCCCTCTCCTTAGCCTTAGCCCCACACGATCATCACAAGAGAAAAACAACAAGGAAGAGGAAAAGGAAGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCCCTAGGGCTGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGATCAAGAATTAGAAGAAGAAGAAGAATTAGAAGATCAAGAAGAAGAAGAAGAAGTAGCAATTTCAGGATTGTGTTTGAGTAATAGTAGACTTAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAATTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGAGAGGACCAGAATCGTTAAGAGGAACACAACCAACAGGGATGTTAAGGCTGCCATGTTATTGCTGCTCACCAGGTTGCCGCAACAACATTGACCATCCAAGAGCAAAGCCTTTAAAGGATTTCAGAACTCTTCAAACTCATTACAAACGCAAGCATGGAATCAAGCCTTTCATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGATCTGATTTTAAGCACAAAAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATTCTAATAATAACGCTAATAACAATAATTCTGATCAACATCGTCGTCATCATCATCGGCATCATCGACTTCATGGGTTCGATGAAGAGGATGACCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1062 42.47 MDDPSTNFFFTNLFKFNSPTTTNFPHHHHPSSSSSSSNPFPPPPPPPPNFFPTFHHPPPPSSPPLRQALPLLSLSPTRSSQEKNNKEEEKEETLMRVALHIGLPSPRAEEEEGEEEEEEEDQELEEEEELEDQEEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHSNNNANNNNSDQHRRHHHRHHRLHGFDEEDDHAYSEVEQDHD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32073533 32076393 + ClCG10G017270.2 Cla10g01643 283302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01643 353 MobiDBLite consensus disorder prediction 334 353 - -
Cla10g01643 353 SMART c2h2final6 255 275 IPR013087 -
Cla10g01643 353 SMART c2h2final6 171 193 IPR013087 -
Cla10g01643 353 Coils Coil 107 140 - -
Cla10g01643 353 MobiDBLite consensus disorder prediction 19 140 - -
Cla10g01643 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 275 IPR013087 -
Cla10g01643 353 MobiDBLite consensus disorder prediction 19 35 - -
Cla10g01643 353 MobiDBLite consensus disorder prediction 81 96 - -
Cla10g01643 353 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Cla10g01643 353 Gene3D Classic Zinc Finger 170 193 - -
Cla10g01643 353 SUPERFAMILY beta-beta-alpha zinc fingers 237 275 IPR036236 -
Cla10g01643 353 PANTHER ZINC FINGER PROTEIN WIP2 2 324 IPR043584 GO:0003700|GO:0010468
Cla10g01643 353 MobiDBLite consensus disorder prediction 109 139 - -
Cla10g01643 353 SUPERFAMILY beta-beta-alpha zinc fingers 167 193 IPR036236 -
Cla10g01643 353 Gene3D Classic Zinc Finger 232 310 - -
Cla10g01643 353 MobiDBLite consensus disorder prediction 36 66 - -
Cla10g01643 353 MobiDBLite consensus disorder prediction 306 353 - -
Cla10g01643 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Cla10g01643 353 PANTHER ZINC FINGER PROTEIN WIP2 2 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00085 Cla-Chr4:2589146 Cla10g01643 Cla-Chr10:32073533 1.06E-121 dispersed
Cla09g00386 Cla-Chr9:3778719 Cla10g01643 Cla-Chr10:32073533 2.87E-102 dispersed
Cla09g00973 Cla-Chr9:10230265 Cla10g01643 Cla-Chr10:32073533 2.93E-25 dispersed
Cla10g01643 Cla-Chr10:32073533 Cla01g01365 Cla-Chr1:27649044 4.75E-22 dispersed
Cla10g01643 Cla-Chr10:32073533 Cla02g02261 Cla-Chr2:37716394 1.72E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61923 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01643 - - csv:101208110 448.358