Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01652 ATGGCTTCTTCCAATATTAAAAGCACCTCCATCATCCAACAAGCAAACCAGCAAGAAGAAGAAAAACAACAACAACAACAACTTCTTCTTCATCATCAACAACAACAACCTCAACTTTTACAAACTCCAAGCTTTGTCATCTCATCAAACTCAAAAAATTCCTCATTATTCAACTTCCAAAACCCCAATTTTCCTGATCATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCTTCCATCCCTTCAAATTTCTTATTTTATGTGCGTTTTTCTTTTGTAGAGAGTTTGGGCATGAGACCTCCGACTTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTACCAATAAAAGGAAATACAGCATTGATAAACCATAGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAGAGAGTTGGCCAACCAACGCAGCAGCAATGGAGCCACTGCATCTGGACCACCCCCAACCCAAACTACAACAACCGAACCTCATCCCAAACCTCCCAAACGTGAGCCCAACAAAAAAGGACTAACCTCAAGCTCAGAACAAGAAGGACCCAAAACCCCAGACCCCAAGACCTTAAGAAGATTGGCTCAAAATCGAGAGGCCGCTAGAAAGAGCAGACTTAGAAAAAAGGCGTATGTTCAGCAGTTAGAGATGAGTAGGATTAAGCTCACCCAGCTGGAGCAAGAACTACAAAGAGCAAGAACTCAGTGTAACATTGTAGATGCTGCGGTGTTCGACATTGAGTATGGACGGTGGCAAGAGGAGCACCACCGGCTAATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCAGCTACCGGAGAACGAGTTGCGGTTGTTCGTGGACAGCTGCCTGGCCCATTACGACGAGGTTCTGAACTTGAAGATGATGGTGGCTAAGTCGGACGTGTTCCACCTTGTCTCCGGCATGTGGAAAACGCCGGCGGAGAGATGCTTCATGTGGATGGGAGATTTTAGGCCCTCCGAACTCATTAAGATAATAATGGGTCAACTAGAGCCATTAACAGAGCATCAAATATTAAACATTTGTGCATTGCAACAATCAACACAAGAGAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTATATGGGCCAAATGACCTTAGCCATCAACAAGCTCTCCACTCTTGAAGGCTTTGTAAGACAGGCAGAGAATTTGAGACACCAAACGATTCACCGATTGCAACAAATGTTGACAACTCGACAAGCAGCAAGATGTTTATTAGCCATTGCTGAATATTTTCATAGGCTTCGAGCTTTGAGTTCCCTATGGTTGGCTCGTCCAAGGCAAGATTAA 1404 44.87 MASSNIKSTSIIQQANQQEEEKQQQQQLLLHHQQQQPQLLQTPSFVISSNSKNSSLFNFQNPNFPDHHHHHHQLPFSMNLPSIPSNFLFYVRFSFVESLGMRPPTLNIFPSQPMHVDPLPIKGNTALINHSDSKIKASEPSRELANQRSSNGATASGPPPTQTTTTEPHPKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQCNIVDAAVFDIEYGRWQEEHHRLMCELRAAVQEQLPENELRLFVDSCLAHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQLEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQAENLRHQTIHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32179883 32188253 - ClCG10G017360.1 Cla10g01652 283311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01652 467 Coils Coil 216 250 - -
Cla10g01652 467 SUPERFAMILY Leucine zipper domain 198 242 IPR046347 GO:0003700|GO:0006355
Cla10g01652 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 195 239 IPR004827 GO:0003700|GO:0006355
Cla10g01652 467 MobiDBLite consensus disorder prediction 142 162 - -
Cla10g01652 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 200 215 IPR004827 GO:0003700|GO:0006355
Cla10g01652 467 MobiDBLite consensus disorder prediction 132 200 - -
Cla10g01652 467 Pfam Seed dormancy control 267 341 IPR025422 GO:0006351|GO:0043565
Cla10g01652 467 PANTHER TRANSCRIPTION FACTOR TGA9 248 466 - -
Cla10g01652 467 Coils Coil 15 35 - -
Cla10g01652 467 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 248 466 - -
Cla10g01652 467 SMART brlzneu 193 253 IPR004827 GO:0003700|GO:0006355
Cla10g01652 467 PANTHER TRANSCRIPTION FACTOR TGA9 78 243 - -
Cla10g01652 467 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 78 243 - -
Cla10g01652 467 Pfam Basic region leucine zipper 194 238 IPR004827 GO:0003700|GO:0006355
Cla10g01652 467 ProSiteProfiles DOG1 domain profile. 249 463 IPR025422 GO:0006351|GO:0043565
Cla10g01652 467 Gene3D - 196 250 - -
Cla10g01652 467 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01552 Cla-Chr10:30926557 Cla10g01652 Cla-Chr10:32179883 1.79E-46 dispersed
Cla10g01652 Cla-Chr10:32179883 Cla11g00770 Cla-Chr11:11078086 4.22E-84 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61926 PF14144 DOG1 5.30E-31 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01652 K14431 - csv:101204923 689.493