Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01670 | ATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAACGTGACGCACTCAGTCCATTGCTATTGCTATTGCCATTGCCACCACCTCGACAGTTTCAAGAACACGAAGCTTTCTTGATTTCTAAGCTCAGAAATCATGATCGAGCAAACATTTTGCGACAATTCACAATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGGATTTTGACTTTAAAATATCCCATCGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCTAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCTTGTTCCAGCCATCCATGATAGGCATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTTCACAGGAAATGCTTCTGA | 1299 | 46.5 | MTEKLDSWIQRERDALSPLLLLLPLPPPRQFQEHEAFLISKLRNHDRANILRQFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 432 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 32418651 | 32422432 | - | ClCG10G017550.1 | Cla10g01670 | 283329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01670 | 432 | SUPERFAMILY | Actin-like ATPase domain | 204 | 432 | IPR043129 | - | |
| Cla10g01670 | 432 | ProSitePatterns | Actins signature 2. | 413 | 421 | IPR004001 | - | |
| Cla10g01670 | 432 | Gene3D | - | 195 | 395 | - | - | |
| Cla10g01670 | 432 | PANTHER | ACTIN 3 | 56 | 431 | - | - | |
| Cla10g01670 | 432 | ProSitePatterns | Actins signature 1. | 110 | 120 | IPR004001 | - | |
| Cla10g01670 | 432 | PANTHER | ACTIN | 56 | 431 | IPR004000 | - | |
| Cla10g01670 | 432 | SMART | actin_3 | 62 | 432 | IPR004000 | - | |
| Cla10g01670 | 432 | Gene3D | - | 65 | 426 | - | - | |
| Cla10g01670 | 432 | ProSitePatterns | Actins and actin-related proteins signature. | 161 | 173 | IPR020902 | - | |
| Cla10g01670 | 432 | PRINTS | Actin signature | 293 | 309 | IPR004000 | - | |
| Cla10g01670 | 432 | PRINTS | Actin signature | 197 | 216 | IPR004000 | - | |
| Cla10g01670 | 432 | PRINTS | Actin signature | 106 | 117 | IPR004000 | - | |
| Cla10g01670 | 432 | PRINTS | Actin signature | 172 | 185 | IPR004000 | - | |
| Cla10g01670 | 432 | PRINTS | Actin signature | 118 | 140 | IPR004000 | - | |
| Cla10g01670 | 432 | PRINTS | Actin signature | 83 | 92 | IPR004000 | - | |
| Cla10g01670 | 432 | SUPERFAMILY | Actin-like ATPase domain | 61 | 210 | IPR043129 | - | |
| Cla10g01670 | 432 | Gene3D | Actin; Chain A, domain 4 | 237 | 328 | - | - | |
| Cla10g01670 | 432 | CDD | NBD_sugar-kinase_HSP70_actin | 65 | 238 | - | - | |
| Cla10g01670 | 432 | Pfam | Actin | 60 | 432 | IPR004000 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01535 | Cla-Chr1:29929329 | Cla10g01670 | Cla-Chr10:32418651 | 0 | dispersed | |
| Cla02g00072 | Cla-Chr2:718261 | Cla10g01670 | Cla-Chr10:32418651 | 0 | dispersed | |
| Cla04g00809 | Cla-Chr4:23142506 | Cla10g01670 | Cla-Chr10:32418651 | 0 | dispersed | |
| Cla07g00303 | Cla-Chr7:3424689 | Cla10g01670 | Cla-Chr10:32418651 | 0 | dispersed | |
| Cla07g00316 | Cla-Chr7:3635791 | Cla10g01670 | Cla-Chr10:32418651 | 6.19E-18 | dispersed | |
| Cla09g01310 | Cla-Chr9:20336805 | Cla10g01670 | Cla-Chr10:32418651 | 0 | dispersed | |
| Cla09g01925 | Cla-Chr9:36902101 | Cla10g01670 | Cla-Chr10:32418651 | 0 | dispersed | |
| Cla10g01670 | Cla-Chr10:32418651 | Cla11g00898 | Cla-Chr11:15304055 | 1.38E-25 | dispersed | |
| Cla10g01670 | Cla-Chr10:32418651 | Cla02g01971 | Cla-Chr2:34771151 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01670 | K10355 | - | csv:101221679 | 750.74 |