Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01676 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAAATGAAGATGTCAATTTAGCTGATTTGACAGAGGAACCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACAAGACAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATGCAGGCAATGGGAATGCATTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACGTGTGAAATTAATAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAACGTGACTCCAATTTATGGTCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCGGAGGACTGCATTTAGTTTCCCAGTGGAGGATGTGATTCGACGATTAGGATACAGATTTGATGTCAATCGTGATCTAGACCAACCGCCAGAGCCAGAGCCAGAGCCAGACAGTTCACATGAGACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGCATTCGTAGAGAACAAATTTCACTGCCCCCTCATGATGATGTAGGAGATTTAGCACACACTGATGTGTCTAGCGTTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTCACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCTCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCGTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATACTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCACCAAGAAGGAGAAGATTGGCTTGA 1290 43.72 MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNAGNGNALQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIRRTAFSFPVEDVIRRLGYRFDVNRDLDQPPEPEPEPDSSHETFGRSPTLLNRILTSRGIRREQISLPPHDDVGDLAHTDVSSVEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDTLQVSDVDSGNSRAPRRRRLA 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32483683 32484972 + ClCG10G017610.1 Cla10g01676 283335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01676 429 MobiDBLite consensus disorder prediction 250 274 - -
Cla10g01676 429 MobiDBLite consensus disorder prediction 398 429 - -
Cla10g01676 429 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Cla10g01676 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 196 IPR013083 -
Cla10g01676 429 CDD RING-HC_AtRMA_like 139 183 - -
Cla10g01676 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 421 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cla10g01676 429 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Cla10g01676 429 PANTHER OS01G0830200 PROTEIN 19 421 - -
Cla10g01676 429 SUPERFAMILY RING/U-box 137 194 - -
Cla10g01676 429 Pfam Zinc finger, C3HC4 type (RING finger) 141 186 - -
Cla10g01676 429 MobiDBLite consensus disorder prediction 352 371 - -
Cla10g01676 429 SMART ring_2 141 181 IPR001841 -
Cla10g01676 429 MobiDBLite consensus disorder prediction 250 267 - -
Cla10g01676 429 MobiDBLite consensus disorder prediction 398 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01589 Cla-Chr1:30580109 Cla10g01676 Cla-Chr10:32483683 2.70E-27 dispersed
Cla04g00920 Cla-Chr4:24165553 Cla10g01676 Cla-Chr10:32483683 2.48E-06 dispersed
Cla05g01328 Cla-Chr5:17115607 Cla10g01676 Cla-Chr10:32483683 2.39E-07 dispersed
Cla10g01207 Cla-Chr10:26714713 Cla10g01676 Cla-Chr10:32483683 1.42E-38 dispersed
Cla10g01676 Cla-Chr10:32483683 Cla11g01769 Cla-Chr11:31299272 1.04E-22 dispersed
Cla10g01676 Cla-Chr10:32483683 Cla08g01518 Cla-Chr8:27962138 6.49E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01676 K10666 - csv:101220497 783.867