Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01676 | ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAAATGAAGATGTCAATTTAGCTGATTTGACAGAGGAACCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACAAGACAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATGCAGGCAATGGGAATGCATTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACGTGTGAAATTAATAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAACGTGACTCCAATTTATGGTCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCGGAGGACTGCATTTAGTTTCCCAGTGGAGGATGTGATTCGACGATTAGGATACAGATTTGATGTCAATCGTGATCTAGACCAACCGCCAGAGCCAGAGCCAGAGCCAGACAGTTCACATGAGACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGCATTCGTAGAGAACAAATTTCACTGCCCCCTCATGATGATGTAGGAGATTTAGCACACACTGATGTGTCTAGCGTTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTCACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCTCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCGTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATACTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCACCAAGAAGGAGAAGATTGGCTTGA | 1290 | 43.72 | MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNAGNGNALQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIRRTAFSFPVEDVIRRLGYRFDVNRDLDQPPEPEPEPDSSHETFGRSPTLLNRILTSRGIRREQISLPPHDDVGDLAHTDVSSVEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDTLQVSDVDSGNSRAPRRRRLA | 429 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 32483683 | 32484972 | + | ClCG10G017610.1 | Cla10g01676 | 283335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01676 | 429 | MobiDBLite | consensus disorder prediction | 250 | 274 | - | - | |
Cla10g01676 | 429 | MobiDBLite | consensus disorder prediction | 398 | 429 | - | - | |
Cla10g01676 | 429 | ProSitePatterns | Zinc finger RING-type signature. | 156 | 165 | IPR017907 | - | |
Cla10g01676 | 429 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 196 | IPR013083 | - | |
Cla10g01676 | 429 | CDD | RING-HC_AtRMA_like | 139 | 183 | - | - | |
Cla10g01676 | 429 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 19 | 421 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Cla10g01676 | 429 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 182 | IPR001841 | - | |
Cla10g01676 | 429 | PANTHER | OS01G0830200 PROTEIN | 19 | 421 | - | - | |
Cla10g01676 | 429 | SUPERFAMILY | RING/U-box | 137 | 194 | - | - | |
Cla10g01676 | 429 | Pfam | Zinc finger, C3HC4 type (RING finger) | 141 | 186 | - | - | |
Cla10g01676 | 429 | MobiDBLite | consensus disorder prediction | 352 | 371 | - | - | |
Cla10g01676 | 429 | SMART | ring_2 | 141 | 181 | IPR001841 | - | |
Cla10g01676 | 429 | MobiDBLite | consensus disorder prediction | 250 | 267 | - | - | |
Cla10g01676 | 429 | MobiDBLite | consensus disorder prediction | 398 | 418 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01589 | Cla-Chr1:30580109 | Cla10g01676 | Cla-Chr10:32483683 | 2.70E-27 | dispersed | |
Cla04g00920 | Cla-Chr4:24165553 | Cla10g01676 | Cla-Chr10:32483683 | 2.48E-06 | dispersed | |
Cla05g01328 | Cla-Chr5:17115607 | Cla10g01676 | Cla-Chr10:32483683 | 2.39E-07 | dispersed | |
Cla10g01207 | Cla-Chr10:26714713 | Cla10g01676 | Cla-Chr10:32483683 | 1.42E-38 | dispersed | |
Cla10g01676 | Cla-Chr10:32483683 | Cla11g01769 | Cla-Chr11:31299272 | 1.04E-22 | dispersed | |
Cla10g01676 | Cla-Chr10:32483683 | Cla08g01518 | Cla-Chr8:27962138 | 6.49E-30 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01676 | K10666 | - | csv:101220497 | 783.867 |