Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01677 ATGGAGTTGGGTTTGAGCCTTGGAGATCATCCTCCTTCCAATTCCAATAAACCATTTGGGTTTCTCTCTAAACCGCTTTCTTCTTCTTCTTCTTCATCCCTCATGGCTTTGGGATTTTGTGTTGGTTTAATTGGACATCATTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCCGCTTCCGCTTCCCTTCAAGATGATGAAGAAGATGATGAAGATGATGATAATGATCAGAAAACGGTTCTTCTCGGTTCAGCTTCCGGTTCGGATCCACCGGTTCAGCTCGATCTTCTTCCTTTGGCTCCTGTTCCTCGCTCTTCTTCTTCCTCCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGCGGAAGTGGGTAGTTCAGAGGGAGGAGAAAGGGTAGAGTTGGATGTGAACCGGGCGGCGGAGACAGAAGACAGTAGGGTGTCGTGTTTCCAAATGGAATTTGGGGCGAGAAATGGCGGCGGAATTAAAAGGAAGAGATCATGGGAAATGGAAATGGAAACAGAAAGAGGAGGTTGTTCAAGAATGAGTGATGATGATCAAGATCATAATGCCTCTGCTGCTGCTCCTAAAAAGCTTCGACTTTCAAAACAACAATCTGCCTTTCTTGAAGAAAGCTTCAAAGAACATACCACCCTCAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAACCTCCAACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACCCTCACCATGTGCCCCTCGTGCGAGCGCGTCGCCGCCACCACCACCACCACCGCCTCTGTTCCCACCAAAACCGCCACCCCCGCCCCGTCGTCCGCTCTTTGCCTCGCCAATAAACCGAAGATCTTGCCATTTCCTCATTTACATCAGGCTGCTTCATGA 1056 46.69 MELGLSLGDHPPSNSNKPFGFLSKPLSSSSSSSLMALGFCVGLIGHHSASASASASASASASLQDDEEDDEDDDNDQKTVLLGSASGSDPPVQLDLLPLAPVPRSSSSSLPFPWLSHHLMAEVGSSEGGERVELDVNRAAETEDSRVSCFQMEFGARNGGGIKRKRSWEMEMETERGGCSRMSDDDQDHNASAAAPKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVAATTTTTASVPTKTATPAPSSALCLANKPKILPFPHLHQAAS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32506524 32508541 + ClCG10G017620.1 Cla10g01677 283336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01677 351 Gene3D - 200 250 - -
Cla10g01677 351 ProSiteProfiles 'Homeobox' domain profile. 192 252 IPR001356 GO:0003677
Cla10g01677 351 SUPERFAMILY Homeodomain-like 189 253 IPR009057 -
Cla10g01677 351 SMART HOX_1 194 256 IPR001356 GO:0003677
Cla10g01677 351 Coils Coil 258 288 - -
Cla10g01677 351 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 61 328 - -
Cla10g01677 351 MobiDBLite consensus disorder prediction 54 99 - -
Cla10g01677 351 Pfam Homeodomain 198 250 IPR001356 GO:0003677
Cla10g01677 351 MobiDBLite consensus disorder prediction 177 199 - -
Cla10g01677 351 CDD bZIP 245 284 - -
Cla10g01677 351 ProSitePatterns 'Homeobox' domain signature. 227 250 IPR017970 GO:0000981|GO:0006355
Cla10g01677 351 MobiDBLite consensus disorder prediction 9 31 - -
Cla10g01677 351 MobiDBLite consensus disorder prediction 1 31 - -
Cla10g01677 351 Pfam Homeobox associated leucine zipper 252 286 IPR003106 GO:0006355|GO:0043565
Cla10g01677 351 PANTHER - 61 328 - -
Cla10g01677 351 MobiDBLite consensus disorder prediction 177 193 - -
Cla10g01677 351 CDD homeodomain 197 253 IPR001356 GO:0003677
Cla10g01677 351 SMART halz 252 295 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00236 Cla-Chr10:2788478 Cla10g01677 Cla-Chr10:32506524 2.68E-63 dispersed
Cla10g01206 Cla-Chr10:26697926 Cla10g01677 Cla-Chr10:32506524 3.36E-56 dispersed
Cla05g00044 Cla-Chr5:544855 Cla10g01677 Cla-Chr10:32506524 5.60E-64 transposed
Cla05g01809 Cla-Chr5:30009259 Cla10g01677 Cla-Chr10:32506524 2.95E-56 transposed
Cla06g01380 Cla-Chr6:27309972 Cla10g01677 Cla-Chr10:32506524 1.54E-53 transposed
Cla07g00648 Cla-Chr7:12977733 Cla10g01677 Cla-Chr10:32506524 1.95E-43 transposed
Cla10g00795 Cla-Chr10:17043236 Cla10g01677 Cla-Chr10:32506524 1.58E-66 transposed
Cla10g01677 Cla-Chr10:32506524 Cla09g00345 Cla-Chr9:3389307 2.78E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61930 PF00046 Homeodomain 2.30E-15 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01677 K09338 - csv:101222778 458.759