Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01731 | ATGAACACCTCCACTGACTCTGATGGCGGAGACGGCGGCAGCGTCGGAAGTTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCGCGACCTATTTCTGCACCAGAACCACCGTTCCGTCGCCGAATCGCCGTCTCCGGCCGGCGGAACAGCGGGATTTCGTCGTCGAGTTTGGACCGGGGCTTGAAGATGAGGTCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGTGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGGGGTTGTTCGATATGTTTGGGGGATTATAAAAACGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTGCGGATGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTGCCGACGCCGATTTCAACCCCTTTGGCGGAGACGGTTCCGTTGGCCATCGGAAGGAGTTGA | 498 | 55.22 | MNTSTDSDGGDGGSVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPSPNRRLRPAEQRDFVVEFGPGLEDEVINGYPKILYSEVKLEGKLESAAARGCSICLGDYKNDDVLRLLPDCGHLFHSGCIDPWLRMNPSCPVCRTSPVPTPISTPLAETVPLAIGRS | 165 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33126627 | 33127124 | - | ClCG10G018180.1 | Cla10g01731 | 283390 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01731 | 165 | CDD | RING-H2_PA-TM-RING | 100 | 142 | - | - | |
Cla10g01731 | 165 | PANTHER | RING-H2 FINGER PROTEIN ATL71-RELATED | 11 | 163 | - | - | |
Cla10g01731 | 165 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 11 | 163 | IPR045899 | - | |
Cla10g01731 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 147 | IPR013083 | - | |
Cla10g01731 | 165 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
Cla10g01731 | 165 | SUPERFAMILY | RING/U-box | 74 | 147 | - | - | |
Cla10g01731 | 165 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
Cla10g01731 | 165 | Pfam | Ring finger domain | 100 | 142 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01481 | Cla-Chr1:29326564 | Cla10g01731 | Cla-Chr10:33126627 | 9.07E-57 | dispersed | |
Cla08g01070 | Cla-Chr8:23395346 | Cla10g01731 | Cla-Chr10:33126627 | 1.64E-37 | dispersed | |
Cla10g01731 | Cla-Chr10:33126627 | Cla02g01569 | Cla-Chr2:30347714 | 5.85E-20 | dispersed | |
Cla10g01731 | Cla-Chr10:33126627 | Cla07g01426 | Cla-Chr7:31467728 | 6.56E-20 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01731 | - | - | mdm:103454174 | 184.496 |