Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01731 ATGAACACCTCCACTGACTCTGATGGCGGAGACGGCGGCAGCGTCGGAAGTTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCGCGACCTATTTCTGCACCAGAACCACCGTTCCGTCGCCGAATCGCCGTCTCCGGCCGGCGGAACAGCGGGATTTCGTCGTCGAGTTTGGACCGGGGCTTGAAGATGAGGTCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGTGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGGGGTTGTTCGATATGTTTGGGGGATTATAAAAACGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTGCGGATGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTGCCGACGCCGATTTCAACCCCTTTGGCGGAGACGGTTCCGTTGGCCATCGGAAGGAGTTGA 498 55.22 MNTSTDSDGGDGGSVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPSPNRRLRPAEQRDFVVEFGPGLEDEVINGYPKILYSEVKLEGKLESAAARGCSICLGDYKNDDVLRLLPDCGHLFHSGCIDPWLRMNPSCPVCRTSPVPTPISTPLAETVPLAIGRS 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33126627 33127124 - ClCG10G018180.1 Cla10g01731 283390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01731 165 CDD RING-H2_PA-TM-RING 100 142 - -
Cla10g01731 165 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 11 163 - -
Cla10g01731 165 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 163 IPR045899 -
Cla10g01731 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Cla10g01731 165 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Cla10g01731 165 SUPERFAMILY RING/U-box 74 147 - -
Cla10g01731 165 SMART ring_2 100 141 IPR001841 -
Cla10g01731 165 Pfam Ring finger domain 100 142 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01481 Cla-Chr1:29326564 Cla10g01731 Cla-Chr10:33126627 9.07E-57 dispersed
Cla08g01070 Cla-Chr8:23395346 Cla10g01731 Cla-Chr10:33126627 1.64E-37 dispersed
Cla10g01731 Cla-Chr10:33126627 Cla02g01569 Cla-Chr2:30347714 5.85E-20 dispersed
Cla10g01731 Cla-Chr10:33126627 Cla07g01426 Cla-Chr7:31467728 6.56E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01731 - - mdm:103454174 184.496