Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01736 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCAATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCGGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTCTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCATGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGGACCGATCGGAAATATCTTCCATCCTTGAGATCACTCTTCTGCTTCGCCGGGATCGGAATCCGGCGGGAGAGCACCGGCGACCGGCTAATCCATTGCAGATTCGAGGTCATCTCTCTAACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAAGCGCATCTTTCGAGCTCTTCTCTCGCTTTCCTTCACCATGGGAACACTGCGAATGATAGATATTGCAGTCAATTTTACAGATGGTATGTTCAAAGGAATTTACCACGGGAAGCAATACCACGCAGCTGACATAGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTTGAGGAATCAAGGGAAGCCCTTAAAATTGCAGAAACAGATGGAAGGCTCTTTTGTACTGTGGGTGTGCATCCAACTAGATGCAAGGAATTTGAAGAGAGTGGTGATCCAGAGACGTATTTTCAGGCTCTTCTTTCATTAACCAAAGAGGGAATTGAGAAAGGAAAGGTTGTTGCAGTTGGTGAATGTGGACTAGATTATGACAGGCTTCACTTTTGCCCTGCCGATATTCAAAAGAAATATTTCGAGAAGCAGTTTGAATTAGCACACACAACAAAGCTTCCTATGTTTCTACACATGAGGGCAGCTGCTGAAGATTTTTGTGACATTGTAGAGCGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTCACAGATAGTGCAGAAGATCGTGACAAGCTTCTCTCATTCAGTAATTTGTGCATAGGGATTAATGGTTGCTCTCTGAAAACTACTGAAAATCTTGATGTTGTGAGGGGTATACCAATCGAGAGACTGATGATTGAGACGGACTCTCCATATTGTGAAATCAAGAATACACATGCTGGTATTAAGTTTGTTAAATCGACCCGGGCTTCTAAGAAGAAAGAGAAGCATGATGAGCAGTGCATAGTGAAAGGAAGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCTTGGCTGGATGTAAAGGCATCATGGATATCGATCAGCTTAGTGAAACTTTGTACCACAATACGTGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCTCTCCTTGCTGGTTCTCATGATCTTGATGAAAAAATTTAG 2022 45.3 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMDRSEISSILEITLLLRRDRNPAGEHRRPANPLQIRGHLSNQFEPISSKFKSKRIFRALLSLSFTMGTLRMIDIAVNFTDGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRFCAGVVHSFTDSAEDRDKLLSFSNLCIGINGCSLKTTENLDVVRGIPIERLMIETDSPYCEIKNTHAGIKFVKSTRASKKKEKHDEQCIVKGRNEPCLVRQVLEVLAGCKGIMDIDQLSETLYHNTCRVFFPQDLDSAADALLAGSHDLDEKI 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33181092 33188149 - ClCG10G018240.2 Cla10g01736 283395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01736 673 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cla10g01736 673 Coils Coil 31 65 - -
Cla10g01736 673 Gene3D - 346 657 - -
Cla10g01736 673 Pfam SNARE domain 238 286 IPR000727 -
Cla10g01736 673 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cla10g01736 673 Pfam TatD related DNase 358 650 IPR001130 GO:0016788
Cla10g01736 673 SMART tSNARE_6 196 263 IPR000727 -
Cla10g01736 673 ProSitePatterns TatD deoxyribonuclease family signature 3. 562 578 IPR018228 -
Cla10g01736 673 Gene3D - 198 287 - -
Cla10g01736 673 SUPERFAMILY Metallo-dependent hydrolases 356 651 IPR032466 -
Cla10g01736 673 Coils Coil 204 224 - -
Cla10g01736 673 Coils Coil 126 150 - -
Cla10g01736 673 SMART SynN_4 26 152 IPR006011 GO:0016020
Cla10g01736 673 CDD SNARE_syntaxin1-like 200 262 - -
Cla10g01736 673 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 353 663 - -
Cla10g01736 673 Gene3D - 29 161 - -
Cla10g01736 673 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Cla10g01736 673 PANTHER DEOXYRIBONUCLEASE TATDN1-RELATED 353 663 - -
Cla10g01736 673 CDD TatD_DNAse 356 651 IPR001130 GO:0016788
Cla10g01736 673 CDD SynN 31 188 IPR006011 GO:0016020
Cla10g01736 673 ProSitePatterns TatD deoxyribonuclease family signature 2. 498 508 IPR018228 -
Cla10g01736 673 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01480 Cla-Chr1:29321841 Cla10g01736 Cla-Chr10:33181092 6.05E-145 dispersed
Cla03g00522 Cla-Chr3:5768142 Cla10g01736 Cla-Chr10:33181092 5.72E-118 dispersed
Cla04g00533 Cla-Chr4:18913942 Cla10g01736 Cla-Chr10:33181092 7.21E-74 dispersed
Cla10g01288 Cla-Chr10:27743657 Cla10g01736 Cla-Chr10:33181092 3.62E-73 dispersed
Cla10g01736 Cla-Chr10:33181092 Cla10g00138 Cla-Chr10:1458241 5.80E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01736 K03424 - csv:101209174 631.328