Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01736 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCAATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCGGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTCTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCATGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGGACCGATCGGAAATATCTTCCATCCTTGAGATCACTCTTCTGCTTCGCCGGGATCGGAATCCGGCGGGAGAGCACCGGCGACCGGCTAATCCATTGCAGATTCGAGGTCATCTCTCTAACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAAGCGCATCTTTCGAGCTCTTCTCTCGCTTTCCTTCACCATGGGAACACTGCGAATGATAGATATTGCAGTCAATTTTACAGATGGTATGTTCAAAGGAATTTACCACGGGAAGCAATACCACGCAGCTGACATAGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTTGAGGAATCAAGGGAAGCCCTTAAAATTGCAGAAACAGATGGAAGGCTCTTTTGTACTGTGGGTGTGCATCCAACTAGATGCAAGGAATTTGAAGAGAGTGGTGATCCAGAGACGTATTTTCAGGCTCTTCTTTCATTAACCAAAGAGGGAATTGAGAAAGGAAAGGTTGTTGCAGTTGGTGAATGTGGACTAGATTATGACAGGCTTCACTTTTGCCCTGCCGATATTCAAAAGAAATATTTCGAGAAGCAGTTTGAATTAGCACACACAACAAAGCTTCCTATGTTTCTACACATGAGGGCAGCTGCTGAAGATTTTTGTGACATTGTAGAGCGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTCACAGATAGTGCAGAAGATCGTGACAAGCTTCTCTCATTCAGTAATTTGTGCATAGGGATTAATGGTTGCTCTCTGAAAACTACTGAAAATCTTGATGTTGTGAGGGGTATACCAATCGAGAGACTGATGATTGAGACGGACTCTCCATATTGTGAAATCAAGAATACACATGCTGGTATTAAGTTTGTTAAATCGACCCGGGCTTCTAAGAAGAAAGAGAAGCATGATGAGCAGTGCATAGTGAAAGGAAGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCTTGGCTGGATGTAAAGGCATCATGGATATCGATCAGCTTAGTGAAACTTTGTACCACAATACGTGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCTCTCCTTGCTGGTTCTCATGATCTTGATGAAAAAATTTAG 2022 45.3 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMDRSEISSILEITLLLRRDRNPAGEHRRPANPLQIRGHLSNQFEPISSKFKSKRIFRALLSLSFTMGTLRMIDIAVNFTDGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRFCAGVVHSFTDSAEDRDKLLSFSNLCIGINGCSLKTTENLDVVRGIPIERLMIETDSPYCEIKNTHAGIKFVKSTRASKKKEKHDEQCIVKGRNEPCLVRQVLEVLAGCKGIMDIDQLSETLYHNTCRVFFPQDLDSAADALLAGSHDLDEKI 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33181092 33188149 - ClCG10G018240.2 Cla10g01736 283395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01736 673 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cla10g01736 673 Coils Coil 31 65 - -
Cla10g01736 673 Gene3D - 346 657 - -
Cla10g01736 673 Pfam SNARE domain 238 286 IPR000727 -
Cla10g01736 673 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cla10g01736 673 Pfam TatD related DNase 358 650 IPR001130 GO:0016788
Cla10g01736 673 SMART tSNARE_6 196 263 IPR000727 -
Cla10g01736 673 ProSitePatterns TatD deoxyribonuclease family signature 3. 562 578 IPR018228 -
Cla10g01736 673 Gene3D - 198 287 - -
Cla10g01736 673 SUPERFAMILY Metallo-dependent hydrolases 356 651 IPR032466 -
Cla10g01736 673 Coils Coil 204 224 - -
Cla10g01736 673 Coils Coil 126 150 - -
Cla10g01736 673 SMART SynN_4 26 152 IPR006011 GO:0016020
Cla10g01736 673 CDD SNARE_syntaxin1-like 200 262 - -
Cla10g01736 673 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 353 663 - -
Cla10g01736 673 Gene3D - 29 161 - -
Cla10g01736 673 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Cla10g01736 673 PANTHER DEOXYRIBONUCLEASE TATDN1-RELATED 353 663 - -
Cla10g01736 673 CDD TatD_DNAse 356 651 IPR001130 GO:0016788
Cla10g01736 673 CDD SynN 31 188 IPR006011 GO:0016020
Cla10g01736 673 ProSitePatterns TatD deoxyribonuclease family signature 2. 498 508 IPR018228 -
Cla10g01736 673 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01736 K03424 tatD; TatD DNase family protein [EC:3.1.21.-] - csv:101209174 631.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01480 Cla-Chr1:29321841 Cla10g01736 Cla-Chr10:33181092 6.05E-145 dispersed
Cla03g00522 Cla-Chr3:5768142 Cla10g01736 Cla-Chr10:33181092 5.72E-118 dispersed
Cla04g00533 Cla-Chr4:18913942 Cla10g01736 Cla-Chr10:33181092 7.21E-74 dispersed
Cla10g01288 Cla-Chr10:27743657 Cla10g01736 Cla-Chr10:33181092 3.62E-73 dispersed
Cla10g01736 Cla-Chr10:33181092 Cla10g00138 Cla-Chr10:1458241 5.80E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01285 . 8 338 SNARE and Associated Proteins AT3G24350 64.8 6.7e-102 367.9
Cla04g00533 . 1 309 SNARE and Associated Proteins AT1G08560 69.6 3.7e-101 365.2
Cla01g01917 . 411 714 SNARE and Associated Proteins AT2G18260 54.7 1.9e-86 316.2
Cla10g01736 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 3.5e-115 411.8
Cla01g01480 . 26 282 SNARE and Associated Proteins AT3G11820 72.8 9.0e-103 370.5
Cla03g00522 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 1.1e-92 337.0
Cla10g01288 . 573 827 SNARE and Associated Proteins AT3G11820 52.5 5.0e-69 258.5
Cla10g01736 . 1 279 SNARE and Associated Proteins AT3G52400 63.9 5.9e-92 334.7
Cla01g01480 . 33 282 SNARE and Associated Proteins AT3G52400 64.8 2.4e-85 312.8
Cla03g00522 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 3.6e-81 298.9
Cla10g01288 . 575 827 SNARE and Associated Proteins AT3G52400 50.6 5.4e-61 231.9
Cla03g00522 . 1 299 SNARE and Associated Proteins AT4G03330 69.2 3.1e-108 388.7
Cla10g01736 . 1 284 SNARE and Associated Proteins AT4G03330 57.2 3.1e-84 308.9
Cla01g01480 . 1 297 SNARE and Associated Proteins AT4G03330 52.6 3.9e-79 292.0
Cla10g01288 . 564 827 SNARE and Associated Proteins AT4G03330 53.8 1.2e-67 253.8
Cla03g00522 . 1 299 SNARE and Associated Proteins AT1G61290 79.3 1.0e-127 453.4
Cla10g01736 . 1 284 SNARE and Associated Proteins AT1G61290 62.0 2.6e-91 332.4
Cla01g01480 . 1 297 SNARE and Associated Proteins AT1G61290 56.6 1.6e-85 313.2
Cla10g01288 . 579 827 SNARE and Associated Proteins AT1G61290 50.6 1.9e-62 236.5
Cla03g00522 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 1.8e-124 442.6
Cla10g01736 . 1 284 SNARE and Associated Proteins AT1G11250 62.0 1.6e-93 339.7
Cla01g01480 . 1 292 SNARE and Associated Proteins AT1G11250 57.2 1.1e-86 317.0
Cla10g01288 . 563 827 SNARE and Associated Proteins AT1G11250 50.6 4.9e-66 248.4
Cla10g01288 . 548 846 SNARE and Associated Proteins AT3G03800 73.6 6.0e-112 401.0
Cla10g01288 . 548 745 SNARE and Associated Proteins AT5G08080 78.4 2.4e-78 288.9
Cla10g00138 . 48 319 SNARE and Associated Proteins AT5G16830 56.5 5.0e-73 271.6
Cla10g00138 . 48 319 SNARE and Associated Proteins AT5G46860 62.1 4.2e-77 285.0
Cla10g00138 . 48 237 SNARE and Associated Proteins AT4G17730 76.4 1.8e-72 269.6
Cla10g00138 . 112 319 SNARE and Associated Proteins AT1G32270 54.8 4.3e-50 195.7
Cla07g00385 . 1 336 SNARE and Associated Proteins AT5G05760 65.9 3.3e-111 398.7
Cla08g01285 . 8 338 SNARE and Associated Proteins AT3G24350 64.8 6.7e-102 367.9
Cla02g01497 . 1 327 SNARE and Associated Proteins AT5G26980 76.8 4.8e-128 454.5
Cla09g00505 . 1 356 SNARE and Associated Proteins AT5G26980 59.2 1.3e-96 350.1
Cla02g01497 . 1 329 SNARE and Associated Proteins AT4G02195 64.4 3.4e-105 378.6
Cla09g00505 . 1 356 SNARE and Associated Proteins AT4G02195 59.7 5.6e-100 361.3
Cla02g01497 . 1 328 SNARE and Associated Proteins AT3G05710 76.3 4.1e-130 461.5
Cla09g00505 . 1 356 SNARE and Associated Proteins AT3G05710 57.1 5.2e-93 338.2
Cla09g01036 . 86 310 SNARE and Associated Proteins AT1G16240 69.5 5.8e-83 304.3
Cla10g00459 . 19 243 SNARE and Associated Proteins AT1G16240 65.7 3.7e-77 285.0
Cla09g01036 . 85 310 SNARE and Associated Proteins AT1G79590 68.8 1.9e-82 302.8
Cla10g00459 . 19 243 SNARE and Associated Proteins AT1G79590 66.1 9.9e-79 290.4
Cla06g00045 . 170 315 SNARE and Associated Proteins AT1G28490 69.9 9.6e-50 193.7
Cla10g01938 . 118 381 SNARE and Associated Proteins AT3G09740 79.7 2.8e-113 405.2
Cla02g02052 . 1 265 SNARE and Associated Proteins AT3G09740 67.4 9.9e-95 343.6
Cla02g02052 . 1 265 SNARE and Associated Proteins AT3G45280 65.9 7.9e-92 334.0
Cla10g01938 . 118 381 SNARE and Associated Proteins AT3G45280 64.4 9.0e-88 320.5
Cla10g01938 . 118 378 SNARE and Associated Proteins AT3G61450 68.2 7.5e-95 344.0
Cla02g02052 . 1 262 SNARE and Associated Proteins AT3G61450 61.0 2.0e-84 309.3
Cla11g00615 . 65 272 SNARE and Associated Proteins AT1G51740 69.0 9.2e-71 263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010905 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31