Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01740 ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGATCTCCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATCCGCCGTCTCCGCTCCATATCCGCCGACTCTGAAACTAATCGCCGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGTGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAGATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGGCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCAATGGATTTATTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCGTTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGACGCAATTAGGGATTGTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTTCTTCATATCCTCCAAATTAA 1218 49.51 MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFVRIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVEAGGVGVLVEILLATPERRVCEMTLTAMDLFCGCADGRAALLAHGGGMAVVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMTQLGIVAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPPN 405
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 33280755 33281972 - ClCG10G018310.1 Cla10g01740 283399
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01740 405 CDD RING-Ubox_PUB 11 53 IPR045210 -
Cla10g01740 405 SUPERFAMILY RING/U-box 4 85 - -
Cla10g01740 405 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Cla10g01740 405 Pfam U-box domain 7 81 IPR003613 GO:0004842|GO:0016567
Cla10g01740 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 403 - -
Cla10g01740 405 SUPERFAMILY ARM repeat 101 371 IPR016024 -
Cla10g01740 405 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Cla10g01740 405 Gene3D - 96 390 IPR011989 -
Cla10g01740 405 PANTHER WDSAM1 PROTEIN 3 403 IPR045185 GO:0061630
Cla10g01740 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01173 Cla-Chr3:24632422 Cla10g01740 Cla-Chr10:33280755 1.04E-94 dispersed
Cla03g01179 Cla-Chr3:24873555 Cla10g01740 Cla-Chr10:33280755 2.99E-104 dispersed
Cla05g00279 Cla-Chr5:2516025 Cla10g01740 Cla-Chr10:33280755 6.23E-65 dispersed
Cla06g00063 Cla-Chr6:669248 Cla10g01740 Cla-Chr10:33280755 4.50E-44 dispersed
Cla04g00523 Cla-Chr4:18788121 Cla10g01740 Cla-Chr10:33280755 1.45E-154 transposed
Cla05g01082 Cla-Chr5:11199364 Cla10g01740 Cla-Chr10:33280755 6.18E-60 transposed
Cla05g01204 Cla-Chr5:13390525 Cla10g01740 Cla-Chr10:33280755 8.67E-56 transposed
Cla07g00524 Cla-Chr7:7795653 Cla10g01740 Cla-Chr10:33280755 1.29E-53 transposed
Cla11g00802 Cla-Chr11:11835698 Cla10g01740 Cla-Chr10:33280755 2.96E-49 transposed
Cla10g01740 Cla-Chr10:33280755 Cla02g02177 Cla-Chr2:36861764 5.87E-142 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01740 - - csv:101208445 666.381