Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01740 | ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGATCTCCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATCCGCCGTCTCCGCTCCATATCCGCCGACTCTGAAACTAATCGCCGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGTGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAGATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGGCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCAATGGATTTATTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCGTTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGACGCAATTAGGGATTGTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTTCTTCATATCCTCCAAATTAA | 1218 | 49.51 | MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFVRIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVEAGGVGVLVEILLATPERRVCEMTLTAMDLFCGCADGRAALLAHGGGMAVVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMTQLGIVAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPPN | 405 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33280755 | 33281972 | - | ClCG10G018310.1 | Cla10g01740 | 283399 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01740 | 405 | CDD | RING-Ubox_PUB | 11 | 53 | IPR045210 | - | |
| Cla10g01740 | 405 | SUPERFAMILY | RING/U-box | 4 | 85 | - | - | |
| Cla10g01740 | 405 | ProSiteProfiles | U-box domain profile. | 6 | 84 | IPR003613 | GO:0004842|GO:0016567 | |
| Cla10g01740 | 405 | Pfam | U-box domain | 7 | 81 | IPR003613 | GO:0004842|GO:0016567 | |
| Cla10g01740 | 405 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PUB23 | 3 | 403 | - | - | |
| Cla10g01740 | 405 | SUPERFAMILY | ARM repeat | 101 | 371 | IPR016024 | - | |
| Cla10g01740 | 405 | SMART | Ubox_2 | 10 | 77 | IPR003613 | GO:0004842|GO:0016567 | |
| Cla10g01740 | 405 | Gene3D | - | 96 | 390 | IPR011989 | - | |
| Cla10g01740 | 405 | PANTHER | WDSAM1 PROTEIN | 3 | 403 | IPR045185 | GO:0061630 | |
| Cla10g01740 | 405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 88 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g01173 | Cla-Chr3:24632422 | Cla10g01740 | Cla-Chr10:33280755 | 1.04E-94 | dispersed | |
| Cla03g01179 | Cla-Chr3:24873555 | Cla10g01740 | Cla-Chr10:33280755 | 2.99E-104 | dispersed | |
| Cla05g00279 | Cla-Chr5:2516025 | Cla10g01740 | Cla-Chr10:33280755 | 6.23E-65 | dispersed | |
| Cla06g00063 | Cla-Chr6:669248 | Cla10g01740 | Cla-Chr10:33280755 | 4.50E-44 | dispersed | |
| Cla04g00523 | Cla-Chr4:18788121 | Cla10g01740 | Cla-Chr10:33280755 | 1.45E-154 | transposed | |
| Cla05g01082 | Cla-Chr5:11199364 | Cla10g01740 | Cla-Chr10:33280755 | 6.18E-60 | transposed | |
| Cla05g01204 | Cla-Chr5:13390525 | Cla10g01740 | Cla-Chr10:33280755 | 8.67E-56 | transposed | |
| Cla07g00524 | Cla-Chr7:7795653 | Cla10g01740 | Cla-Chr10:33280755 | 1.29E-53 | transposed | |
| Cla11g00802 | Cla-Chr11:11835698 | Cla10g01740 | Cla-Chr10:33280755 | 2.96E-49 | transposed | |
| Cla10g01740 | Cla-Chr10:33280755 | Cla02g02177 | Cla-Chr2:36861764 | 5.87E-142 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01740 | - | - | csv:101208445 | 666.381 |