Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01776 ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCATCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGGCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCACCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGCTAGAGGATGATCAAACTACCTTTATCATGAGTAGCATTATAAAAAACATCACACTTAATCTATACATTTCTCTTTAG 906 51.99 MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGGGWTRMFCSTNPYPSSHHHHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMLEDDQTTFIMSSIIKNITLNLYISL 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33700239 33702128 + ClCG10G018660.1 Cla10g01776 283435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01776 301 CDD B3_DNA 40 142 IPR003340 GO:0003677
Cla10g01776 301 SMART B3_2 42 153 IPR003340 GO:0003677
Cla10g01776 301 MobiDBLite consensus disorder prediction 182 216 - -
Cla10g01776 301 Gene3D - 33 161 IPR015300 -
Cla10g01776 301 MobiDBLite consensus disorder prediction 195 216 - -
Cla10g01776 301 Pfam B3 DNA binding domain 42 152 IPR003340 GO:0003677
Cla10g01776 301 SUPERFAMILY DNA-binding pseudobarrel domain 40 153 IPR015300 -
Cla10g01776 301 MobiDBLite consensus disorder prediction 238 254 - -
Cla10g01776 301 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 243 IPR044800 GO:0003700
Cla10g01776 301 MobiDBLite consensus disorder prediction 235 254 - -
Cla10g01776 301 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 39 243 - -
Cla10g01776 301 ProSiteProfiles B3 DNA-binding domain profile. 42 153 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00220 Cla-Chr6:2625118 Cla10g01776 Cla-Chr10:33700239 1.92E-46 dispersed
Cla06g01223 Cla-Chr6:25468459 Cla10g01776 Cla-Chr10:33700239 1.14E-28 dispersed
Cla10g01776 Cla-Chr10:33700239 Cla10g02148 Cla-Chr10:37094920 1.61E-17 dispersed
Cla10g01776 Cla-Chr10:33700239 Cla07g00776 Cla-Chr7:21656637 8.06E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61939 PF02362 B3 9.40E-31 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01776 - - bhj:120091802 457.603