Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01826 ATGGACTTTGATCTGAAGCAATGTAGAACACAGAGGGAGTCAGAGGAGCAACAACATTCTGCAAAGATTTCTAAGTTGTTTGTTGAACAGACCCATCATCTTTCTTCTTCTTCCACTTCTGTTCTTCCTTTGTTTGTACCTGCTGATTCCAACAACAACTCCAAAACTTCCAACATCTTGTCAGCATTTCAAGATTCAACTTCTTCTACATTGCCCAGGATGCTGGGTTATTTCAGTGTGGCTCAAAGGCAAGAACTTGAACTTCAAGCTCTCATTTTCCGGTATATGTTGGCCGGCGCCGCCGTCCCGCCGGAGCTTCTCCACCCTATTAAGAAAAGCCTTATCTCTTCCTCTTCTTCTACTCCTTTCTTTCTTCATCATCCTCTTCAACATTTCCCTCACTATCCCACTTCTTTGTTGCAAGCAGGGCATTGGGGCAGAGCCGCCATGGATCCGGAGCCTGGCCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGCTCAAGAGATGTCGTCGCCGGCCAGAAATACTGTGAGCGCCATATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAAACTACCACAACTAACCCCTCCACCACCGCCGCCGCTGTTGGCGGCGGTGGCGGCGGTTGTTCTCTCAGTTCCAACTCCAACCGTGTTATTGGTGGCGGTGGTGGTCGGCCTTTTTTGACTGTGGAAAGTGGAAATTATTTCTCTACGTGTGGACAAACCCCATCCGTTGATCTTCTCCATCTCAATCAAGGTTCTTGTTCTAATTCCTTATCAGAGAACAAGAAATTCTATGAATCCCACAAAGAGCCTTCCGCCGGAGATGCTAAATCCGACGGCCACATTTTAAGGCATTTTTTCGACGATTGGCCGCGGTCCGAAAATGGTGGTTGTGGGAATGACAACAACAGTGTCAACCAACGAATGAACTCCACGTCTGCTTCGGCAACATCCCTTTCTATTTCGATGCCTGGGAACCCTCCGTCATCGTCTTCTGACGTGTCGTTGAAATTGTCGACCGGAGGAAGTTCTGATCAAGGCAGTGACCACCATATCCACCAAAATGGCAACGTTGACCGAGAACACGTGCAGTTGAATTGGGCTGCAGGATGGGCCGCCACGCAGATGGCGTCAATGGGCGGACCGCTGGCTGAAGCGCTGCGCTCCGCCAACAACTCGTTGCCAACGAGTGTGCTGCATCAGTTGCAAAGAACAACCAACTCGGAAGCTAGCTTTATTAGCACTTGA 1266 49.92 MDFDLKQCRTQRESEEQQHSAKISKLFVEQTHHLSSSSTSVLPLFVPADSNNNSKTSNILSAFQDSTSSTLPRMLGYFSVAQRQELELQALIFRYMLAGAAVPPELLHPIKKSLISSSSSTPFFLHHPLQHFPHYPTSLLQAGHWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETTTTNPSTTAAAVGGGGGGCSLSSNSNRVIGGGGGRPFLTVESGNYFSTCGQTPSVDLLHLNQGSCSNSLSENKKFYESHKEPSAGDAKSDGHILRHFFDDWPRSENGGCGNDNNSVNQRMNSTSASATSLSISMPGNPPSSSSDVSLKLSTGGSSDQGSDHHIHQNGNVDREHVQLNWAAGWAATQMASMGGPLAEALRSANNSLPTSVLHQLQRTTNSEASFIST 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34203610 34205564 - ClCG10G019220.1 Cla10g01826 283485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01826 421 MobiDBLite consensus disorder prediction 297 360 - -
Cla10g01826 421 MobiDBLite consensus disorder prediction 302 357 - -
Cla10g01826 421 ProSiteProfiles WRC domain profile. 151 195 IPR014977 -
Cla10g01826 421 PANTHER - 9 421 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cla10g01826 421 Pfam QLQ 78 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cla10g01826 421 ProSiteProfiles QLQ domain profile. 77 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cla10g01826 421 PANTHER GROWTH-REGULATING FACTOR 3 9 421 - -
Cla10g01826 421 SMART QLQ_2 76 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cla10g01826 421 MobiDBLite consensus disorder prediction 184 211 - -
Cla10g01826 421 Pfam WRC 152 194 IPR014977 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01826 Cla-Chr10:34203610 Cla11g00136 Cla-Chr11:1698303 3.03E-38 dispersed
Cla10g01826 Cla-Chr10:34203610 Cla03g01458 Cla-Chr3:30119657 9.05E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61943 PF08879 WRC 2.70E-22 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01826 - - csv:101203628 641.343