Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01829 ATGACTTCTTCATCTTCTAGCTCAACCAATGAACACTTTCTGTCACGAGCGATGGTGAAGCGGAGGGCTGGTCGGAAAAAATTTCAAGAGACTCGCCACCCGATTTACAAAGGCGTTCGCCAAAGAAATGGTAAATGGGTCAGCGAGCTCCGACGACCTAATAAAAAATCTAGCTTTTGGGTTGGAACTTTTTGTAGCCCGAAAATGGCGGCGGTGGCATACGATGTCGTTGCCTTGGCCATTAGAGGTGAGTCTGCAACTCTAAATTTTCCTGCGTTGGCTCACTCTTTTCCACGAGTTATGTTGTCATCGTTGTCCATTAACGATATTCGGATGATGGCAGTTGAGGCTGCAGAGGCATTTACGTCAAGCGATATATTGACGTCTTTGTCTCCATCGTCATCGTCACCGTCATTGTTGTGTTCTTCTTTGATGTCGGAGGAGAAAGTGGTGTCAGATTTGTTTTGGGATGAGGAGGAGGTGTTTAACATGCCGACGATAATCGCCGATATGGCAGAGGGGTTGATTCTAACACCACCGGGAATGAAGAGCGAATTTGATTCAGAGGATTACGAAAACACATTTGAGTTGTCATTATGGAACTACGAGTGA 612 45.75 MTSSSSSSTNEHFLSRAMVKRRAGRKKFQETRHPIYKGVRQRNGKWVSELRRPNKKSSFWVGTFCSPKMAAVAYDVVALAIRGESATLNFPALAHSFPRVMLSSLSINDIRMMAVEAAEAFTSSDILTSLSPSSSSPSLLCSSLMSEEKVVSDLFWDEEEVFNMPTIIADMAEGLILTPPGMKSEFDSEDYENTFELSLWNYE 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34256760 34257371 + ClCG10G019250.1 Cla10g01829 283488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01829 203 SMART rav1_2 35 97 IPR001471 GO:0003700|GO:0006355
Cla10g01829 203 Gene3D AP2/ERF domain 35 92 IPR036955 GO:0003700|GO:0006355
Cla10g01829 203 CDD AP2 34 93 IPR001471 GO:0003700|GO:0006355
Cla10g01829 203 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Cla10g01829 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 201 IPR045277 GO:0003700
Cla10g01829 203 ProSiteProfiles AP2/ERF domain profile. 35 91 IPR001471 GO:0003700|GO:0006355
Cla10g01829 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1B-LIKE 4 201 - -
Cla10g01829 203 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Cla10g01829 203 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Cla10g01829 203 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00966 Cla10g01829 CCT
Cla04g00966 Cla10g01829 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00552 Cla-Chr1:6088208 Cla10g01829 Cla-Chr10:34256760 4.69E-45 dispersed
Cla05g00845 Cla-Chr5:8356626 Cla10g01829 Cla-Chr10:34256760 2.01E-42 dispersed
Cla10g01829 Cla-Chr10:34256760 Cla11g01484 Cla-Chr11:28476465 1.99E-27 dispersed
Cla10g01829 Cla-Chr10:34256760 Cla10g01830 Cla-Chr10:34267959 2.07E-34 tandem
Cla10g01829 Cla-Chr10:34256760 Cla04g00966 Cla-Chr4:24776841 6.06E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61944 PF00847 AP2 2.50E-09 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01829 - - csv:101209920 278.1