Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01830 ATGTATATTAAAATCCATTTTCTTTTCCCTTTCGTCCCCAAAATCTCCAAGCTGGCTTTGCCTGTGGCTTCCACCCAACCCCTCTTCACAACTCCGTTCATCTCCAACTGGTTTGCACTCTCTTCTTCCTCCCTTTCCCCATTTTCCCTCCTCCATAAATGGCTTCCCTTCCCTCCACCGTCTTCTTCAATCCCCTTCATGGCTTCTTCCTCCGGCCGCCACCCTGTCTACCGAGGTGTTCGCCGCCGCAACACCGGCAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAGCCCAACCGTATTTGGTTAGGAACTTTCCCGACTGCTGAAATGGCCGCCGTCGCTTACGACGTTGCAGCCCTTGCCCTCAAGGGCCAAGACGCCGAGCTTAATTTCCCTAATTCTGCTTCGTCTCTCCCCATCCCCGCGTCTAGGTCACCATCTGATATTCAGGCGGCAGCTGCATCGGCCGCCGCTGCGCTTGGAGCGGCTGCGGCGGCCATGGAAGCACGAAATAATAACGGTTCTCGTCGTGGAACTAATTCCGGCGATGTTGTTTATGGAGGAAGATATGGTCAAGATGGATTGGGAAATCAGTTCATGGATGAAGACTTGATTTTTGATATGCCTAATGTTCTAATGAACATGGCCGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAATATCCATGGCGGAGAGGATGACGGCGACAACGGCGCTGACCAAAATCTTTGGAATTTTCCCTAA 747 51.94 MYIKIHFLFPFVPKISKLALPVASTQPLFTTPFISNWFALSSSSLSPFSLLHKWLPFPPPSSSIPFMASSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPIPASRSPSDIQAAAASAAAALGAAAAAMEARNNNGSRRGTNSGDVVYGGRYGQDGLGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNIHGGEDDGDNGADQNLWNFP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34267959 34269574 - ClCG10G019260.2 Cla10g01830 283489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01830 248 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Cla10g01830 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 68 248 - -
Cla10g01830 248 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Cla10g01830 248 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Cla10g01830 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 68 248 - -
Cla10g01830 248 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Cla10g01830 248 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
Cla10g01830 248 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Cla10g01830 248 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Cla10g01830 248 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00301 Cla-Chr1:3166749 Cla10g01830 Cla-Chr10:34267959 2.34E-48 dispersed
Cla04g00966 Cla-Chr4:24776841 Cla10g01830 Cla-Chr10:34267959 6.90E-58 dispersed
Cla10g00348 Cla-Chr10:4644933 Cla10g01830 Cla-Chr10:34267959 3.19E-47 dispersed
Cla10g01830 Cla-Chr10:34267959 Cla11g00204 Cla-Chr11:2372697 8.92E-34 dispersed
Cla10g01829 Cla-Chr10:34256760 Cla10g01830 Cla-Chr10:34267959 2.07E-34 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61945 PF00847 AP2 1.50E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01830 - - csv:101203380 295.819