Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01831 | ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATCACTACTGCCCCATCTCGCTCTCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCCTCCTCCACGGCCGCCGCCTCCGCCTTCCGCCACCACCATAATCCCTACGACCTCATCATGATGATGCCACGTGACACTCAGCTACCCGACTTTCGCTCCGATTCCGCCACCACACCACCCGCCATCGTCTCCGCTCAGCCAGGTCCCTCCGCTTTCGAGCTCGAAACCGCCTCCATCGCCGCCGACTGCGCCACCGCTCGATGGCCTCGCCAAGAAACTCTTACTCTCTTGGATATCAGATCTCGACTTGATTCTAAGTTCAAGGAAGCCAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGAAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAACTACAGATTCTTTAGGCAGTTGGAAGCTCTCTATGGTGAAACAAGCAATTCCCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACCAACCTTAGATTCCAACAGAACGGGACCAACAACCCGACTGCGGCACCTCCAATGAGCCACGAAGCTCACCAGAAGCATTACTGCGATAGCCTCAGCCTCTCGAACACGTCAGAGTTCGAAACCTCGGCCTCGTCAGATGGCAACGACGACCCCAGCTCGGTTGGCATTATGGACAACGATTCAATGGAGAAGAGGAGGAAGAAGCGAGGCGGGAAATGCTGGAAGGCGAAAATCAAACAGTTCATCGACTCGCAAATGAGGAAGCTAATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGATTCGCGAAGAGGAATGGAGGAGACAAGAAGTGTCAAGAATGGATAGGGAGAGAAGCTTTTGGGAAAAGGAGAGAGCATGGATAGAATCTAGAGATGCTGCATTAATGGATGCATTACAAAGGCTAACAGGACGAGAATTGAGAGATAATCAATACAACTCCTCACCCGACCTCGGATTAATCGTAGCCGAGCGTCATAGAAATAATAATGAGAACCAAAACGAGGATGGGAGCGAAATACTAAACAACAACACAGCTAGAGAATTACTAGCAGACAACAATAATTACCAAAGGAAAATAATAGACAATCAAGGCAACAAGAAACGCAAGGAGAATTCAACATCAACAGCCACCACCTACAATCTTTACTTCCAACAAACAGATTCCACCCTTTACAGTCGTGGCGGTGGCCGTGGCAGTGGCGGACCGTACGGCGGTGCCACCGACATCAAAGAACAAAGTCCAAACAGTTCAAACGTGGGCGGTGGTGGCGGCGGCGGCAGCGTGCAAGATAATTGCTTTCGCTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTATGGGAAAATTTTGGTCTTAAACTCAACAATGGAAGTGACCAAACTTGA | 1575 | 47.68 | MEMDDQYALSDLRHLITTAPSRSHFPSSSSIPHHDLSSSTAAASAFRHHHNPYDLIMMMPRDTQLPDFRSDSATTPPAIVSAQPGPSAFELETASIAADCATARWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNLRFQQNGTNNPTAAPPMSHEAHQKHYCDSLSLSNTSEFETSASSDGNDDPSSVGIMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMIREEEWRRQEVSRMDRERSFWEKERAWIESRDAALMDALQRLTGRELRDNQYNSSPDLGLIVAERHRNNNENQNEDGSEILNNNTARELLADNNNYQRKIIDNQGNKKRKENSTSTATTYNLYFQQTDSTLYSRGGGRGSGGPYGGATDIKEQSPNSSNVGGGGGGGSVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT | 524 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 34285311 | 34288430 | + | ClCG10G019270.2 | Cla10g01831 | 283490 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01831 | 524 | CDD | GT1 | 104 | 169 | - | - | |
| Cla10g01831 | 524 | MobiDBLite | consensus disorder prediction | 211 | 226 | - | - | |
| Cla10g01831 | 524 | Pfam | Myb/SANT-like DNA-binding domain | 104 | 190 | IPR044822 | - | |
| Cla10g01831 | 524 | MobiDBLite | consensus disorder prediction | 451 | 487 | - | - | |
| Cla10g01831 | 524 | MobiDBLite | consensus disorder prediction | 247 | 264 | - | - | |
| Cla10g01831 | 524 | MobiDBLite | consensus disorder prediction | 471 | 486 | - | - | |
| Cla10g01831 | 524 | MobiDBLite | consensus disorder prediction | 422 | 441 | - | - | |
| Cla10g01831 | 524 | Gene3D | - | 105 | 167 | - | - | |
| Cla10g01831 | 524 | ProSiteProfiles | Myb-like domain profile. | 104 | 162 | IPR001005 | - | |
| Cla10g01831 | 524 | MobiDBLite | consensus disorder prediction | 211 | 232 | - | - | |
| Cla10g01831 | 524 | MobiDBLite | consensus disorder prediction | 247 | 280 | - | - | |
| Cla10g01831 | 524 | PANTHER | - | 422 | 511 | - | - | |
| Cla10g01831 | 524 | PANTHER | - | 22 | 412 | - | - | |
| Cla10g01831 | 524 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR PTL | 422 | 511 | - | - | |
| Cla10g01831 | 524 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR PTL | 22 | 412 | - | - | |
| Cla10g01831 | 524 | Coils | Coil | 299 | 326 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g02199 | Cla-Chr5:33693837 | Cla10g01831 | Cla-Chr10:34285311 | 2.42E-85 | dispersed | |
| Cla08g00363 | Cla-Chr8:9412698 | Cla10g01831 | Cla-Chr10:34285311 | 8.71E-22 | dispersed | |
| Cla08g00365 | Cla-Chr8:9549947 | Cla10g01831 | Cla-Chr10:34285311 | 1.10E-15 | dispersed | |
| Cla10g01831 | Cla-Chr10:34285311 | Cla10g02096 | Cla-Chr10:36676511 | 1.04E-07 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61946 | PF13837 | Myb_DNA-bind_4 | 2.40E-19 | CL0123 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01831 | - | - | csv:101209675 | 898.656 |