Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01831 ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATCACTACTGCCCCATCTCGCTCTCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCCTCCTCCACGGCCGCCGCCTCCGCCTTCCGCCACCACCATAATCCCTACGACCTCATCATGATGATGCCACGTGACACTCAGCTACCCGACTTTCGCTCCGATTCCGCCACCACACCACCCGCCATCGTCTCCGCTCAGCCAGGTCCCTCCGCTTTCGAGCTCGAAACCGCCTCCATCGCCGCCGACTGCGCCACCGCTCGATGGCCTCGCCAAGAAACTCTTACTCTCTTGGATATCAGATCTCGACTTGATTCTAAGTTCAAGGAAGCCAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGAAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAACTACAGATTCTTTAGGCAGTTGGAAGCTCTCTATGGTGAAACAAGCAATTCCCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACCAACCTTAGATTCCAACAGAACGGGACCAACAACCCGACTGCGGCACCTCCAATGAGCCACGAAGCTCACCAGAAGCATTACTGCGATAGCCTCAGCCTCTCGAACACGTCAGAGTTCGAAACCTCGGCCTCGTCAGATGGCAACGACGACCCCAGCTCGGTTGGCATTATGGACAACGATTCAATGGAGAAGAGGAGGAAGAAGCGAGGCGGGAAATGCTGGAAGGCGAAAATCAAACAGTTCATCGACTCGCAAATGAGGAAGCTAATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGATTCGCGAAGAGGAATGGAGGAGACAAGAAGTGTCAAGAATGGATAGGGAGAGAAGCTTTTGGGAAAAGGAGAGAGCATGGATAGAATCTAGAGATGCTGCATTAATGGATGCATTACAAAGGCTAACAGGACGAGAATTGAGAGATAATCAATACAACTCCTCACCCGACCTCGGATTAATCGTAGCCGAGCGTCATAGAAATAATAATGAGAACCAAAACGAGGATGGGAGCGAAATACTAAACAACAACACAGCTAGAGAATTACTAGCAGACAACAATAATTACCAAAGGAAAATAATAGACAATCAAGGCAACAAGAAACGCAAGGAGAATTCAACATCAACAGCCACCACCTACAATCTTTACTTCCAACAAACAGATTCCACCCTTTACAGTCGTGGCGGTGGCCGTGGCAGTGGCGGACCGTACGGCGGTGCCACCGACATCAAAGAACAAAGTCCAAACAGTTCAAACGTGGGCGGTGGTGGCGGCGGCGGCAGCGTGCAAGATAATTGCTTTCGCTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTATGGGAAAATTTTGGTCTTAAACTCAACAATGGAAGTGACCAAACTTGA 1575 47.68 MEMDDQYALSDLRHLITTAPSRSHFPSSSSIPHHDLSSSTAAASAFRHHHNPYDLIMMMPRDTQLPDFRSDSATTPPAIVSAQPGPSAFELETASIAADCATARWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNLRFQQNGTNNPTAAPPMSHEAHQKHYCDSLSLSNTSEFETSASSDGNDDPSSVGIMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMIREEEWRRQEVSRMDRERSFWEKERAWIESRDAALMDALQRLTGRELRDNQYNSSPDLGLIVAERHRNNNENQNEDGSEILNNNTARELLADNNNYQRKIIDNQGNKKRKENSTSTATTYNLYFQQTDSTLYSRGGGRGSGGPYGGATDIKEQSPNSSNVGGGGGGGSVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT 524
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 34285311 34288430 + ClCG10G019270.2 Cla10g01831 283490
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01831 524 CDD GT1 104 169 - -
Cla10g01831 524 MobiDBLite consensus disorder prediction 211 226 - -
Cla10g01831 524 Pfam Myb/SANT-like DNA-binding domain 104 190 IPR044822 -
Cla10g01831 524 MobiDBLite consensus disorder prediction 451 487 - -
Cla10g01831 524 MobiDBLite consensus disorder prediction 247 264 - -
Cla10g01831 524 MobiDBLite consensus disorder prediction 471 486 - -
Cla10g01831 524 MobiDBLite consensus disorder prediction 422 441 - -
Cla10g01831 524 Gene3D - 105 167 - -
Cla10g01831 524 ProSiteProfiles Myb-like domain profile. 104 162 IPR001005 -
Cla10g01831 524 MobiDBLite consensus disorder prediction 211 232 - -
Cla10g01831 524 MobiDBLite consensus disorder prediction 247 280 - -
Cla10g01831 524 PANTHER - 422 511 - -
Cla10g01831 524 PANTHER - 22 412 - -
Cla10g01831 524 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 422 511 - -
Cla10g01831 524 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 22 412 - -
Cla10g01831 524 Coils Coil 299 326 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02199 Cla-Chr5:33693837 Cla10g01831 Cla-Chr10:34285311 2.42E-85 dispersed
Cla08g00363 Cla-Chr8:9412698 Cla10g01831 Cla-Chr10:34285311 8.71E-22 dispersed
Cla08g00365 Cla-Chr8:9549947 Cla10g01831 Cla-Chr10:34285311 1.10E-15 dispersed
Cla10g01831 Cla-Chr10:34285311 Cla10g02096 Cla-Chr10:36676511 1.04E-07 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61946 PF13837 Myb_DNA-bind_4 2.40E-19 CL0123 Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01831 - - csv:101209675 898.656