Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01837 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACCAGGGAACCGGGTTTGAAGAAGCCGCGACTGGCCGATGAGGCTGAACGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGGCCAGTTGTTTCCGGGAACAATATTGTGCAACCACCCAGATTTCGAGCAAGTGATAGGGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAACCTCAGCCACCGCAGCATCAGGAGCTTGTGAGCCAGTACAGGACCGCCCTTGCGGAGCTGACTTTCAATTCCAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTTCAGGCTGCGAAGGCGATCTCTGCCACCGTTTACGCCAACATTCTCGAGGTTCCTAGTGAGCAGAAGCTACCATCACTTTATCTATTGGACAGTATTGTAAAGAATATTGGAAGAGATTATATAAAATACTTTGCAGCAAGACTACCGGAGGTATTCTGCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTGTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGATTATTGAGAAAGAACTTGGGTTCGTGCCTAGCGGTAGTTCTTCTGGGGCCATAACCTCCAAGCCAGATTTGCAGGCACAACGTCCAACTCCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAGCGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTGGTGTGACAACAAATGTAAGTCAGGATGTAGCCCAAGCCAAAATTAATACTGGACGTCCATGGGCAGATGCTCCAATTAAAGTGCTTGACATTCAACGTCCCCTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAACATCACGGCTGGATTTGCAGACTACGAATATGGTTCTGATCTTTCAAGGACATCGGGTGTTGGAAGAAGGGTCGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCTGAGAAACTATCTGGTCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCAAACACTGGTTCACGTCTACTGCCCGTGCAAAATTTTTCAAGCAGCAGCAGCAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGATGACAGGTCATGGTGCACCTGCTATCGCCGGTAGCACTAGAAAAGATCAATGGACTCCTGAGGATTCGGATAATTCGGGTATGGACAATAAGCCATTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAACAAAGGTCTACGTGGCAACTGCAAGAGTCAATATCTCTGGATGGGCTAAGAGGCGGGGTTCCTAGAAAGAATTCAGGTCAGTCAGGAGGTTATAGTGCTACTCTTACTGCACTGTCAGGTGCTAATTCTTCATCTAATATTGGGGCTTCAGGACATGGGTTTCTTAATAAAGGAGGTTCAGGGCCCCTTGGGACTGTAAGCCATCAAAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAACCACCCTTGCACCAACGCCCCCCTTCACCATTGTTAGTGGATCATGTTCCTCATCAAATACATGACCATAAAACAACTTCATTTTCTAATCTTGATCCACGTAAAAGACATATGCAGGATGCTGCCCTTGGCCTGCATCCCAGCGTTCGACCAGATAATCTTCAAAAGCCCCTGCCTCATGACCTACAAGCTCCAGCTTTATCCATACCTGCGTCTCAACCTAGGCACCAGTTCTCTTTATCTGAGTCACTAAAACCTGATGTTACACAGTCGGAACTTTCTAGTCAGCATGCAGTATCAATTCCAGGCACCAATATTGGACCATCCTCATCAGCTGGGACAGTTCCAGATCATTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGACTTTTCTCCAACCATCCAATAACCAGTAGCATGCAGCAGAATATCGGCTTCCAAGATGTGGGAAATATGAAACCTCGCTCAAGCATTAAACCTCCGCTACCAAGCCGGTCTTCTCCTGCCCATACATTCGCAGAGCCAAAGATTCAGGGAGAATCCCCAGTAGGTCCTCCATCACTTGAAAGCCCATCAACTATGGTTAAGTTGTCTCGAACTAAGGAAGAAGAACCATCGTTGCCATCTGATCCACTCCCACCTTCATCTCCTATGAACAGTGCATCCACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTTATATCAGCTTCAAAAGGAGAATTAACAAATAGTGTGACATCCCAGATGCCTTCACAGCATGAAAATTTGAAGTCAGGTGATGCTGTGGCTAGTTCTGTACCAGTTCCTTCCATCCCTGTTTCCTCTGCCAGTCACTCATCTATGAGACTTGAATCACCTTCAAAAGCTGCCGCTAGGAGCTCTAGTAGTCCACCTCCATCTGCCACAACTGAAATAAAGAACCTCATAGGCTTTGAGTTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGATGATATTCCATACCAATGTAAGATCTGTGGTCTTAGACTGAAATGTGAAGAACAGTTGGAAACTCACTCACGGTGGCACACATTAAGAGCTGAGGCAAACAATTCTAGTAGCACACCAAGAAGATGGTATCCAAGTTCAAGTGATTGGATTTCTGGAAATGCGAGACTTCTACTTGATGCTGCAACTTCTCTGGACGAGTTCAACATGATGGAAGAAGATAATGAGCCAATGGTTCCTGCGGATGAAGATCAATTTGCCTGTGTTATATGTGGTGAACTTTTTGAAGATTTTTATAGTCAAGAGTTGGGTAATTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGTGGGTAGCGAGGTAGGATGCACAAATGAACAAGTTGCCAGAGGACCCATTGTGCACACGAATTGTTTGACTGAAAGTTCAGTATATGACGTGGGAGTGGCAACTGATATTAAGATGGCCAGGCCAACGATAGTGCTGAATGCTATGGCAATGGACTGGTTGCATGCATTTTCTCGAGTTAATATAAGCTTCTTTGCACTATGTCCAACCTTCTACAGGAAATGGATGTATGATGCTTCCCCTGCAAAACGTCATATCGGAACTACTCTGGCGGACATTCTGCTCGTGCAATTGGCGAGGGGATGCAAAAAGGGAGTATGGATATGA 3414 45.75 MEMESSRRPFDRTREPGLKKPRLADEAERGGNINGRPFPQRPVVSGNNIVQPPRFRASDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQIIEKELGFVPSGSSSGAITSKPDLQAQRPTPHSIHVNPKYIERQRLQQSGRVKGMTSDATGVTTNVSQDVAQAKINTGRPWADAPIKVLDIQRPLRDAPNDMAQEKNITAGFADYEYGSDLSRTSGVGRRVVDEGRDKPWSSAGSNLAEKLSGQRNGFNIKLGYENYPAPKSANTGSRLLPVQNFSSSSSNRVLSTNWKNSEEEEFMWGEMNSMMTGHGAPAIAGSTRKDQWTPEDSDNSGMDNKPLSVRDTGASVDREASSDSQSSEQRELGDSGQQRSTWQLQESISLDGLRGGVPRKNSGQSGGYSATLTALSGANSSSNIGASGHGFLNKGGSGPLGTVSHQRFPSRSVAFPSGQPPLHQRPPSPLLVDHVPHQIHDHKTTSFSNLDPRKRHMQDAALGLHPSVRPDNLQKPLPHDLQAPALSIPASQPRHQFSLSESLKPDVTQSELSSQHAVSIPGTNIGPSSSAGTVPDHLPAEILGEPSTSSLLAAVMKSGLFSNHPITSSMQQNIGFQDVGNMKPRSSIKPPLPSRSSPAHTFAEPKIQGESPVGPPSLESPSTMVKLSRTKEEEPSLPSDPLPPSSPMNSASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSVTSQMPSQHENLKSGDAVASSVPVPSIPVSSASHSSMRLESPSKAAARSSSSPPPSATTEIKNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKCEEQLETHSRWHTLRAEANNSSSTPRRWYPSSSDWISGNARLLLDAATSLDEFNMMEEDNEPMVPADEDQFACVICGELFEDFYSQELGNWMFKGAMYITIPSVGSEVGCTNEQVARGPIVHTNCLTESSVYDVGVATDIKMARPTIVLNAMAMDWLHAFSRVNISFFALCPTFYRKWMYDASPAKRHIGTTLADILLVQLARGCKKGVWI 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34332127 34339128 - ClCG10G019340.1 Cla10g01837 283496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01837 1137 Gene3D - 73 203 IPR008942 -
Cla10g01837 1137 SMART 558neu5 81 203 IPR006569 -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 535 549 - -
Cla10g01837 1137 CDD CID_Pcf11 83 195 - -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 713 796 - -
Cla10g01837 1137 Pfam CID domain 88 196 IPR006569 -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 825 840 - -
Cla10g01837 1137 SUPERFAMILY ENTH/VHS domain 78 202 IPR008942 -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 64 78 - -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 1 78 - -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 825 882 - -
Cla10g01837 1137 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1060 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cla10g01837 1137 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 533 562 - -
Cla10g01837 1137 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1060 - -
Cla10g01837 1137 ProSiteProfiles Zinc finger C2H2 type domain profile. 916 943 IPR013087 -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 849 882 - -
Cla10g01837 1137 ProSitePatterns Zinc finger C2H2 type domain signature. 918 938 IPR013087 -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 454 484 - -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 782 796 - -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 410 504 - -
Cla10g01837 1137 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00271 Cla-Chr3:3218684 Cla10g01837 Cla-Chr10:34332127 1.94E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01837 K14400 - csv:101223169 1847.02