Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01846 ATGGAGTTTTGGGGTGCTGAGGTTAAAGTTGGAGAACCTCTCTTGGTGAGGCCTGGAGAGGAGAAGATACTGCATCTGTCACAGGCGTGTCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTCCTATATGTCAAGGTCGGCAATCAAAAGCTTGTTCTGGGGACACTATCCTCAGAGAAGTTCCCACAAGTGTCTTTTGATCTGCTGTTTGACAAAGAATTTGAGCTATCTCATAATTGGAAAAACGGAAGCTTTGAGTTTTTTTCATTGCCACGGAGGAACCTTCTTGTAAATACTGATTCTGAAGAGGATTTTCCTCTAGCTGCCATTGACAACGGAAAGCCAGAGCCAGAGCCAGCGCCTAAGAAAGATGCAAAGCCTGATACTTCTGGAGCGAAGAAAAAGGTGCAGATTGTAGAACCAAACAAAGGTGGCTCTAATTCAATTATTGATAGTAAGAAGAATGAAGACAGTTCTGATGAAGATGATGATGAAGATGAAGAGAGCACAGATGATGAGAATGCAAATGGGGGTGAAGAAGATGATAGTGATGATGATGAAAATGAGTTTTCTGGAGTCGATAGTGAAGACTCTGATGAGGACTCGGACGACAGTTTAGAAGAGGATGAGCAGACACCAAAAAAGGCTGAAGCAAGCAAGAAAAGACCATTAGATTCTGCTAATAAGACGCCTGCTCCTGACAAGAAGGCAAAACTCGTCACTCCTCAGAAGACTGATGGCAAGAAAGGCGTTGCTCATGTAGCTACTCCTCATCCTTCAAAGAAGACCGGGAAAATGCCCGCTGCTAATGACAAAAATAAACAGCAGACTCCCAAACTAGCTGGCGCCACATTCCCTTGCAAAACTTGCAACAGGACATTTGGGTCAGAAACTGCGTTACAATCCCACTCAAAAGCCAAGCACACAGCCGAGAAGTGA 945 44.34 MEFWGAEVKVGEPLLVRPGEEKILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLLFDKEFELSHNWKNGSFEFFSLPRRNLLVNTDSEEDFPLAAIDNGKPEPEPAPKKDAKPDTSGAKKKVQIVEPNKGGSNSIIDSKKNEDSSDEDDDEDEESTDDENANGGEEDDSDDDENEFSGVDSEDSDEDSDDSLEEDEQTPKKAEASKKRPLDSANKTPAPDKKAKLVTPQKTDGKKGVAHVATPHPSKKTGKMPAANDKNKQQTPKLAGATFPCKTCNRTFGSETALQSHSKAKHTAEK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34402068 34406640 + ClCG10G019420.1 Cla10g01846 283505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01846 314 MobiDBLite consensus disorder prediction 210 234 - -
Cla10g01846 314 MobiDBLite consensus disorder prediction 118 135 - -
Cla10g01846 314 Pfam C2H2-type zinc finger 287 310 - -
Cla10g01846 314 MobiDBLite consensus disorder prediction 159 209 - -
Cla10g01846 314 Gene3D Nucleoplasmin core domain 1 87 - -
Cla10g01846 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 287 314 IPR013087 -
Cla10g01846 314 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 309 - -
Cla10g01846 314 MobiDBLite consensus disorder prediction 109 287 - -
Cla10g01846 314 SMART c2h2final6 287 310 IPR013087 -
Cla10g01846 314 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 309 - -
Cla10g01846 314 Gene3D Classic Zinc Finger 285 313 - -
Cla10g01846 314 ProSitePatterns Zinc finger C2H2 type domain signature. 289 310 IPR013087 -
Cla10g01846 314 Pfam Nucleoplasmin-like domain 3 80 IPR041232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01846 Cla-Chr10:34402068 Cla02g02127 Cla-Chr2:36327363 1.79E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61948 PF17800 NPL 3.30E-10 CL0055 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01846 - - csv:101207572 464.922