Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01860 ATGTTCCTGACGAGACATTCTCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTTGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCGGCAGCTGCGTCTCTCTTTATTCAGAGAGTTTGGAGGTGCTTCAGAGCGACTAAGATAGCTGCTTTGCAGCTTCAAGAAGAATGGGAGGAGTTGGTGAATAATAATTCTGGTGCACGGGGTGGCACATTCATTTCCTATAATATTTTGAGACCATTTCTCTTCTTTATCTCGTCATTTCTGAAACGACCTCAAAATATCAAGACCAAAGATATAGCCTGTATGAAGAATTGCTTTAAAATCTTGTTTGAAAGCATAAATTCTACTGGAAGAAGAATATGGACTTACCAATCAAGGAAGCTTATTTCTGTATGCTTATTTATTCTTGTGCATTTCGACAAGTTGCAAGTGAAGGAGCAAGAAATTGTTGTTACGACCTCTTTGGCCATGCGCCTTATAGTTGTCTTAACTGATCATCATGGGTGGAAGAGTGTTAATGAGAACAGCCGTGCTGTTGCTGATGCAGCCGTGAAGGATTTAGTTCATTATTTGGGAACTTTTGAAAGTGGTCTTTACGTATCAGTCAGGCAATACATGTATAAATTGAGTGTCCTACAGTCTACGCAGACCAACAGTACCATCCAGGCAAATGATTTATTAGTCACTTCTGTGAGTGCAATAACTTTAGCATTACGACCATTTCATTTAATGAATTTTGATATGATTGGTACTACTTCGTGGGAAGGGCATCATGTTGCTGAACAGTTTTGCTTGTATCTACTGACAATTCCCGGGTTTGTTCAAAATCTGCCACAAGTTCTTGTGCCAGCTGTCAAGCATCGATCTATCTTGCTACCATGCTTCTGGACTCTATTGGTAAGGGCCACTGAGGTTGAACAGTTCATTATGGCCAAGAAAGAGACAATTTTGTTGGGAATGTCGGACATGGATCAGTTATCAGTTGAATGTGGCTCTAAGGTTGTTCCGGCAGTTGGGTGGGCTCTTGCTAACATTATATGTTTGGTAGCTGGGAGTGAAACTAAAGCAAGGGATTCCGGTTGGTTCAGTCAGAGTTTAGACTATGTGTTATATGTTCGTGTGGTTGTCACTTTGGCAGAAAGCTTTTTGGCTTTGAATGGGGATTTAGGATGTGGTAAAAAGGAGAACCAAGATATCCAGAGCGACAATGTAACTTCATATGAACCCTCTGATGCAGCTGTTCTCAAGAATGAAATGTCATCTATGTCCTTAAGCACATCCTTCATCGATATGGTTAGGCCTATTTGTGAACAGAGGCATCTCACAGATCTTTTGAAAATGGTAAATACAAATGTTTATTCTGAAAGTAGCACTGCACAATCAAATAATATGGAATGTATGAAAAGCTTGAAACTGCTCGATATATCATACTTCTACATGTACATGCTCAGAATATTTTCATTATTGAATCCGTTGGTCGGATCCTTACCTATTCTTAATATGTTATCTTTTACTCCTGGATTTCTTGTTGATCTGTGGGGAGTGTTAGAAAGTTCCCTTTTCCCCAATGTTGCTGATGAAGCCGATGATCACTTTCCTGGTTCAAGTAAAATATCAAGTAAAAGAAAAGATGAAGTTTTTGGCAAAAAGCAAAACCCAGTCAGTAAGGATGGAAGTAGTAGGTGGGTAACTGTCTTCCATAAATTCACAAGCAAGTCACAATCGGGTAGTGATCATATGGACACAATTGAAGTTCAATCTAGTTCAAGACAGGGGGATGACAACTTATGCGATTTATGGGACATAAAATCTTTGAGTTGTGGTCCACAAGGTATTTCAAAAGATTTGTCATGTCTGCTCTATCTTTTCAGTGCCACTTATGCTCATCTGCTGCTGGAGCAGCAAAGGAAACTTGCATCAATGCTTAACACGCTTGTGTATAATGGCTTGTCCCATGGTACTGGTCAGCAAAACACATCCCTTATGGAATCTGCAATCAGGTGCTTGCACCTGCTGTATGAGAGGGATTGCAGACATCAGTTTTGTCCTCCTACCCTGTGGCTTTCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATCAGCTAACTTACGGGCAGATGATACTTTAACAGTTCCAAGCGTAGGATCAATTATTACTACCACACCACATGTGTTCCCATTTGAGGAAAGGGAGGAATCAACTTTGAGTGAGTTTGGCTTCGGCGATCCTAAATCATCGTCGCCGATGTTGACCTGTGGTGAAAATAAATGGCCAATAGGGCTGCTCCCCCTTGGCAACCCTGTGAGGTCATCGTCAATGTTGGTTGCCAGAGCTGTCATCGGCAATGATTGTTGTCGGAGTGAGGCGGTGGTAGTTTGTCTACGGTGGTTAATGTTGGAGTTGGTTGCTGGTAGAGTTGAAATGTTTAGAGAGTTTGTCAAGATGGACAAAGTCTCCCGAAAAATGGCAGGTGAAGTTGGTGGACCTGGGTCACGATCATTTGAAATTGTAGTTCGTCGTAGTCATGTTGTTGAAGATGGATTCAGACAGTTAAATTCTCTGGGGTCAAGGCTGAAATCAGCTATCCATGTTTCTTTTGTTAGTGAATGTGGCCTTCCTGAGGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTTTTGACTGATATAGCCAAAGCAGCATTTTCACCTGAATATGGACTATTCTCTCAAACCTCTACTCCAGACAGGCATCTTATCCCTAATGCATCGGCACGATATCTCGACAATGGTATCCAGATGATCGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATATTGCTTGACTACTCATTTTCGCATGCTTTTGTCCACAAGCTTTTAGGCCGGTATAGCTTCCTTGATGAGCTATCAACACTTGATCCTGAGCTCTACAAGAATCTCATGTATGTCAAGTCTTTTGAGGGTGATGTCAAAGAACTCTCGCTGGATTTCACTGTAACTGAAGAATCATTTGGCAAACGACATGTTATTGAGCTTAAACATGGTGGCAAGGATATTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCACGCCATCGCGGATTATAAACTTAATCGACAGATATTGCCTTTTTCAAACGCGTTTTATAGGGGTTTAACTGATCTTATATCACCGTCTTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTGCTTTCAGGTGGAAAACATGATATTGACGTTGATGATTTGAGGAAGAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACAATTAGTATTTTCTGGGAGGTTATGAAAGGATTTGAACCAAAAGATCGTTGTTTGCTTCTTAAATTTGTCACCAGTTGTTCTCGAGCTCCATTACTTGGATTCAAATACCTGCAACCAGCTTTTACCATCCATAAGGTTTCGTGTGACGTACCTATATGGGCTTCAATAGGAGGACAGGATGTCGAGCGGCTTCCAACTGCTTCCACTTGCTATAATACTCTCAAGCTTCCTACATATAAGCGTTCGAGTACTTTGAGATCAAAACTCCTCTATGCAATCAATTCCAACTCAGGATTTGAACTTTCTTAA 3675 41.2 MFLTRHSQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAASLFIQRVWRCFRATKIAALQLQEEWEELVNNNSGARGGTFISYNILRPFLFFISSFLKRPQNIKTKDIACMKNCFKILFESINSTGRRIWTYQSRKLISVCLFILVHFDKLQVKEQEIVVTTSLAMRLIVVLTDHHGWKSVNENSRAVADAAVKDLVHYLGTFESGLYVSVRQYMYKLSVLQSTQTNSTIQANDLLVTSVSAITLALRPFHLMNFDMIGTTSWEGHHVAEQFCLYLLTIPGFVQNLPQVLVPAVKHRSILLPCFWTLLVRATEVEQFIMAKKETILLGMSDMDQLSVECGSKVVPAVGWALANIICLVAGSETKARDSGWFSQSLDYVLYVRVVVTLAESFLALNGDLGCGKKENQDIQSDNVTSYEPSDAAVLKNEMSSMSLSTSFIDMVRPICEQRHLTDLLKMVNTNVYSESSTAQSNNMECMKSLKLLDISYFYMYMLRIFSLLNPLVGSLPILNMLSFTPGFLVDLWGVLESSLFPNVADEADDHFPGSSKISSKRKDEVFGKKQNPVSKDGSSRWVTVFHKFTSKSQSGSDHMDTIEVQSSSRQGDDNLCDLWDIKSLSCGPQGISKDLSCLLYLFSATYAHLLLEQQRKLASMLNTLVYNGLSHGTGQQNTSLMESAIRCLHLLYERDCRHQFCPPTLWLSPARTSRPPVAVAARTHEALSANLRADDTLTVPSVGSIITTTPHVFPFEEREESTLSEFGFGDPKSSSPMLTCGENKWPIGLLPLGNPVRSSSMLVARAVIGNDCCRSEAVVVCLRWLMLELVAGRVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVVRRSHVVEDGFRQLNSLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFSQTSTPDRHLIPNASARYLDNGIQMIEFLGRVVGKALYEGILLDYSFSHAFVHKLLGRYSFLDELSTLDPELYKNLMYVKSFEGDVKELSLDFTVTEESFGKRHVIELKHGGKDISVTNENKMQYVHAIADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGKHDIDVDDLRKNTRYTGGYTEGSRTISIFWEVMKGFEPKDRCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVSCDVPIWASIGGQDVERLPTASTCYNTLKLPTYKRSSTLRSKLLYAINSNSGFELS 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34500005 34515238 + ClCG10G019570.2 Cla10g01860 283519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01860 1224 ProSiteProfiles HECT domain profile. 880 1224 IPR000569 GO:0004842
Cla10g01860 1224 Pfam HECT-domain (ubiquitin-transferase) 911 1224 IPR000569 GO:0004842
Cla10g01860 1224 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 4 752 - -
Cla10g01860 1224 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 827 1224 - -
Cla10g01860 1224 SMART hect_3 874 1224 IPR000569 GO:0004842
Cla10g01860 1224 Gene3D Hect, E3 ligase catalytic domain 982 1061 - -
Cla10g01860 1224 Gene3D Hect, E3 ligase catalytic domains 858 1096 - -
Cla10g01860 1224 SUPERFAMILY Hect, E3 ligase catalytic domain 855 1217 IPR035983 GO:0004842
Cla10g01860 1224 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 4 752 IPR044611 GO:0000209|GO:0061630
Cla10g01860 1224 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 827 1224 IPR044611 GO:0000209|GO:0061630
Cla10g01860 1224 CDD HECTc 856 1222 IPR000569 GO:0004842
Cla10g01860 1224 Gene3D Hect, E3 ligase catalytic domain 1099 1223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00408 Cla-Chr6:4985504 Cla10g01860 Cla-Chr10:34500005 4.29E-90 dispersed
Cla10g00417 Cla-Chr10:5602472 Cla10g01860 Cla-Chr10:34500005 2.93E-56 dispersed
Cla10g01860 Cla-Chr10:34500005 Cla10g01955 Cla-Chr10:35378218 3.82E-23 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01860 K10588 - csv:101205886 1256.12