Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01863 ATGCGGGCCTTCTCTTCCTTGATCTTGGCCTTAGCATTGGCCGTTCTGCCGGCGACGGTGGTTTACTGTGGCTTCCCCGTCCCACTTCTCTCTCTGCACAGGGCCTTCCCTTCTTCTCTCCCTGTCCAACTCGAAACCCTCAGAGCTCGGGACCGACTCAGGCATGCCAGAATCTTGCAAGGTGTTGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTACTCGTCGGGCTGTACTTTACCAAAGTCAAATTGGGCACTCCCCCGATGGAATTTACGGTACAGATCGACACTGGAAGTGATATATTGTGGGTTAACTGCAATTCCTGCAATGGCTGCCCCAGATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCTAGCTCATCAAGTTCTTCACTCGTCTCCTGTTCTGACCCAATATGCAATTCTGCATTCCAAACGACTGCAACACAGTGTATAACTCAGAGTAATCAATGCAGTTACACCTTTCAGTATGGCGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTTGACATGGTCATGGGACATTCTATGATTGCTAACTCTTCAGCTAGTGTTGTTTTTGGTTGTAGCACCTATCAGTCTGGAGACTTGACTAAATCAGACCATGCAATAGATGGCATTTTTGGATTTGGCCCCGGGGATTTGTCTGTCATATCACAGTTGTCAGCTCGAGGGATAACTCCTAAAGTATTTTCCCATTGTTTAAAGGGAGAAGGAAATGGGGGTGGTATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGCCTCACTATAACTTATATCTGCAAAGCATCGCTGTCAATGGTCAGACACTGCCAATTGATCCATCTGTGTTTGCAACATCAGTAAATCGAGGAACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTTGAAGAAGCTTATACTCCATTTGTCAGTGCTATAACTGCTGCTGTTTCCCAATCTGTAACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACTAGGTCTGTTTCTACTTCTAACTGTATCAAAGTTCAGGAAGGAGTAACGATCTTAGGAGATCTTGTTATGAAAGATAAGATATTTGTATATGATTTGGCTCTCCAGCGAATCGGGTGGGCAAACTATGATTGTTCTCAAGCTGTAAATGTATCAGTCACATCTGGGAAGAACGAGTTCGTCAATGCAGGGCAGTTGAGCGTGAGCGGCTCAACCCGAGATAAGCTCCTTCAATCACTAACTATGGTAGCATTAGCAATGTTAATGAGTCTCATTTTGTTCATCCACTCCCAACTTCTGTGTTTGAGCGATTTCCTTTTCGCAATGGCGGCAGTTTCTCAGACGACGGTTCATGCCTCTCCGGCTTCCCTCTACGTTGGCGACCTTCATCCTGATGTCACTGATGGCCAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCTCCACTGGGCGCTCTCTCTCTTATGGCTATGTCAATTTCATTTCTCCTCAAGATGCAACCAATGCCATGGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCACGTCGCGATGCTGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCGGAGGATTCTGCAAATGCTGCCATAGAGTCAATGAATGGTTTTACCATTGGTGATAAGCAGATATATGTTGGAAAGTTTGTCAGGAAGAGTGATCGAGTTTTGGCCAATGCTGATGTTAAATATACCAATTTGTATGTGAAAAATCTTGACCCAGAGATTGGGGAAGAGCATTTGCAGGAGAAGTTCTCTGAGTTTGGAAAGATTTCCAGCATGATTATTTCACGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATAAACTTTGACAACTCTGATGATGCCAAACGGGCTTTGGAAACGCTTAATGGATCGCAACTTGGTTCTAAGGTTATCTACATTGCGAGGGCACAAAAGAAGACCGAACGTGAGGAAGTATTACGTCGACATTATGAAGAGAAATGTAAGGAGCAAGTGTTAAAATACAAGGGATCAAATGTGTATGTGAAGAACATTGATGATGATGTTACTGATGAAGAACTAAGAGAACGTTTTAGTCAGTTTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCCAATCCTGATGAAGCTAAAAGAGCCGTGAACACTTTGCAAGGATGTATGTTTCACGGGAAGCCACTCTATTTGGCCATAGCACAAAGAAAAGAGGATAGACAAATGCAATTAAAGCTTCAGTTTGCACAACGGCTGGCAGGGATTCCTGGACCGTCAACTACAATTTTTCCTGGTGGATACCCACCTTATTACTACCCAGCACCAGGTGTTGTTCCACCAGTACCATCTCGTCCAGGTCTGATGTTTCCGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTATACATCTCCTGCAAGACCTGGCTTTCAACCTTCACCTGTACCTATTATTCCAAATGCTTCGAGGCAACCCAGGCAAAACAGAGGCAAAATGAATGGACCAATGCTTTCTCATCAAAATGGAGTCCAAGCCGTCTCTTATATGCAAAATTCACAAGATGCCAATCAATCAGTTGTTACTACAAAATCATCCGGCAATCAACAGGTAAACTGTTCTGGTCTTTCTACGAAATATTCACTTGCCTTCTTATGCCATCGTACTTGTCCCATTCATCTGATTTTGGAGTTGAATGGACTTTATCAGAATGGTTTCTGTGGTTATTTATTTTTCTATCTGTTGGGATCTCTTCAATTTTCTTGTGTTGAACTGAAAGGTGCTGATGGTACTAATTTGGACAAAGTTTTAGTTAAGTATGTCCCAAATGCTCGGCCATGCGAAACAAACAAAGCTTCTGGCCCCGCCTCAGCTGCTGCTTTTAATTCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCTTAGTCCAAAAACGCAAGCCGGATCTTGCTGCGAAAATTACCGGTATGCTTCTGGAGATGGACAACTCGGAGTTGCTGCTCCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGACTAAGCTGTCCAACCAAGACACACTCAGTTTCTTACCAGCTGAGCTTGCAGTTAGCTGA 3504 43.95 MRAFSSLILALALAVLPATVVYCGFPVPLLSLHRAFPSSLPVQLETLRARDRLRHARILQGVVDFSVEGSSDPLLVGLYFTKVKLGTPPMEFTVQIDTGSDILWVNCNSCNGCPRSSGLGIQLNFFDASSSSSSSLVSCSDPICNSAFQTTATQCITQSNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGHSMIANSSASVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLPIDPSVFATSVNRGTIVDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGNQCYLVSTRSVSTSNCIKVQEGVTILGDLVMKDKIFVYDLALQRIGWANYDCSQAVNVSVTSGKNEFVNAGQLSVSGSTRDKLLQSLTMVALAMLMSLILFIHSQLLCLSDFLFAMAAVSQTTVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAMEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEDSANAAIESMNGFTIGDKQIYVGKFVRKSDRVLANADVKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFDNSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPAPGVVPPVPSRPGLMFPPLGMRPGWRANTYTSPARPGFQPSPVPIIPNASRQPRQNRGKMNGPMLSHQNGVQAVSYMQNSQDANQSVVTTKSSGNQQVNCSGLSTKYSLAFLCHRTCPIHLILELNGLYQNGFCGYLFFYLLGSLQFSCVELKGADGTNLDKVLVKYVPNARPCETNKASGPASAAAFNSVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKISKTKLSNQDTLSFLPAELAVS 1167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34538337 34549774 - ClCG10G019600.2 Cla10g01863 283522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01863 1167 ProSiteProfiles Peptidase family A1 domain profile. 79 443 IPR033121 -
Cla10g01863 1167 Pfam Xylanase inhibitor C-terminal 282 358 IPR032799 -
Cla10g01863 1167 Gene3D Acid Proteases 63 265 IPR021109 -
Cla10g01863 1167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 761 838 IPR000504 GO:0003723
Cla10g01863 1167 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Cla10g01863 1167 PRINTS Pepsin (A1) aspartic protease family signature 374 389 IPR001461 GO:0004190|GO:0006508
Cla10g01863 1167 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Cla10g01863 1167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 763 831 IPR000504 GO:0003723
Cla10g01863 1167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 569 637 IPR000504 GO:0003723
Cla10g01863 1167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 481 551 IPR000504 GO:0003723
Cla10g01863 1167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 660 728 IPR000504 GO:0003723
Cla10g01863 1167 SMART rrm2_1 762 834 IPR003954 GO:0003676
Cla10g01863 1167 SMART rrm2_1 659 731 IPR003954 GO:0003676
Cla10g01863 1167 SMART rrm2_1 568 640 IPR003954 GO:0003676
Cla10g01863 1167 PANTHER POLYADENYLATE-BINDING PROTEIN 473 1153 - -
Cla10g01863 1167 SUPERFAMILY PABC (PABP) domain 1069 1155 IPR036053 GO:0003723
Cla10g01863 1167 Gene3D - 467 567 IPR012677 -
Cla10g01863 1167 Coils Coil 730 750 - -
Cla10g01863 1167 CDD RRM1_I_PABPs 480 558 - -
Cla10g01863 1167 Gene3D - 745 848 IPR012677 -
Cla10g01863 1167 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1072 1149 IPR002004 GO:0003723
Cla10g01863 1167 PANTHER RNA BINDING PROTEIN 473 1153 - -
Cla10g01863 1167 CDD pepsin_A_like_plant 79 402 IPR034161 -
Cla10g01863 1167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 658 735 IPR000504 GO:0003723
Cla10g01863 1167 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Cla10g01863 1167 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 479 1145 IPR006515 GO:0003723
Cla10g01863 1167 Pfam Poly-adenylate binding protein, unique domain 1079 1144 IPR002004 GO:0003723
Cla10g01863 1167 Gene3D - 1070 1159 - -
Cla10g01863 1167 SUPERFAMILY RNA-binding domain, RBD 759 852 IPR035979 GO:0003676
Cla10g01863 1167 Gene3D - 643 744 IPR012677 -
Cla10g01863 1167 SUPERFAMILY RNA-binding domain, RBD 652 745 IPR035979 GO:0003676
Cla10g01863 1167 CDD RRM4_I_PABPs 760 838 - -
Cla10g01863 1167 SUPERFAMILY Acid proteases 75 406 IPR021109 -
Cla10g01863 1167 SMART rrm1_1 762 834 IPR000504 GO:0003723
Cla10g01863 1167 SMART rrm1_1 480 553 IPR000504 GO:0003723
Cla10g01863 1167 SMART rrm1_1 659 731 IPR000504 GO:0003723
Cla10g01863 1167 SMART rrm1_1 568 640 IPR000504 GO:0003723
Cla10g01863 1167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 479 557 IPR000504 GO:0003723
Cla10g01863 1167 SMART poly_2 1084 1147 IPR002004 GO:0003723
Cla10g01863 1167 Gene3D Acid Proteases 366 409 IPR021109 -
Cla10g01863 1167 Gene3D Acid Proteases 266 365 IPR021109 -
Cla10g01863 1167 SUPERFAMILY RNA-binding domain, RBD 479 646 IPR035979 GO:0003676
Cla10g01863 1167 CDD RRM2_I_PABPs 565 641 IPR045305 -
Cla10g01863 1167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 567 644 IPR000504 GO:0003723
Cla10g01863 1167 Gene3D - 568 640 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00942 Cla10g01863 CCT
Cla04g00942 Cla10g01863 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00613 Cla-Chr2:6731074 Cla10g01863 Cla-Chr10:34538337 2.83E-07 dispersed
Cla08g00733 Cla-Chr8:19630576 Cla10g01863 Cla-Chr10:34538337 1.66E-11 dispersed
Cla10g01863 Cla-Chr10:34538337 Cla11g00924 Cla-Chr11:15963659 5.60E-80 dispersed
Cla02g01036 Cla-Chr2:21039411 Cla10g01863 Cla-Chr10:34538337 2.67E-10 transposed
Cla05g02528 Cla-Chr5:36670102 Cla10g01863 Cla-Chr10:34538337 1.50E-06 transposed
Cla06g00090 Cla-Chr6:903927 Cla10g01863 Cla-Chr10:34538337 4.34E-08 transposed
Cla10g01052 Cla-Chr10:24386283 Cla10g01863 Cla-Chr10:34538337 3.02E-07 transposed
Cla10g01863 Cla-Chr10:34538337 Cla02g02117 Cla-Chr2:36188064 0 wgd
Cla10g01863 Cla-Chr10:34538337 Cla04g00942 Cla-Chr4:24478256 5.18E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01863 K13126 - csv:101203793 949.118