Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01864 ATGGCAGATCCCGCGTCAGACTCTACCACCAGCAACGCATCGGCCTCTGCCACCGCCACCGCCACCAATGACGCGATTTCTGCCCCACCCGTAGTTACGCCAGTGCCCAAGCGAGCTTGGGGCGATGAAGAAGATGATGATGTGGGTGATGCTGGAGATTCATCCTCTGCACCTACGGAGTACTTGGAATCCCTTAAAATTCAAGACGAAACAACGCTTGAAGAACCCATTGACTCTGACATCACAGCGGTGACAACCGGTGAAACTCCGTATACATCAGCTAGTACTTTTGAGGATCTGAATCTGTCTAAAGAGTTGTTGAAGGGTTTGTATGTTGAGATGAGATTCCATAAGCCAAGTAAAATTCAAGCTATAAGTTTACCTATGATCTTGACTCCTCCTTACAAAGACTTAATTGCTCAAGCACACAACGGTTCTGGAAAGACTACCTGTTTTGTGCTTGGGATGTTGAGTCGTGTTGATGTGAACTTGAAGGCTCCTCAGGCGTTTTGCATATGTCCTACAAGGGAGTTAGCCATGCAGAATATTGAGGTTCTTAAGAAAATGGGAAAATACACTGGGATAACTTCAGAATGTGCTATTCCTGCTGACAGTGCTAACTATGTGCCTATGTCAAAGCGACCACCAATAACTGCGCAAGTTGTGATCGGAACTCCTGGCACAATAAAGAAATGGATGACAGCGAGGAAGTTGGGAGTAAGTTGCGTGAAGATTCTCGTTTTTGATGAGGCTGATCATATGCTTAGCGAGGATGGCTTTCAGGATGATTCATTGAGAATCATGAGGGACATTGAGAGAAGTAGCCCTCATTGCCAGGTTCTTCTGTTCTCTGCAACATTTGATGAGAATGTTAAAAAGTTTGTCTCTAGGGTTGTTAAAGACTACAACCAACTTTTTGTGAAGAAGGAAGAACTATCTTTGGAGAGTGTGAAGCAATTCAAGTTGATATGTCCAGATGAATTAACTAAAATTCGGGTCATAAAAGATAGAATTTTCGAACTTGCAGACAAATTGGGTCAGACAATTATATTTGTGCGCACAAGAAACAGTGCTGGCATGTTACATAAGGCACTAGTTGATCTTGGTTATGATGTGACTACCATTCAAGGGGCAATGACCAATGAAATTAGAGACAAAATAATAAAAGAGTTCAAGGACGGTTTGACCAAAGTTCTTATTTCGACTGACCTTCTAGCTCGAGGCTTTGATCAGCAACAGGTCAACCTAGTTATCAATTATGATCTTCCTCTTAAATATGAATCTTCTTCACAAACGACAAAATACAGATTTTCCTCATCGGCTGATCCTAACTATGAGGTGTACCTTCATAGAATTGGTCGAGCAGGTCGTTTTGGGCGCAAGGGAGCTGTGTTTAACTTGCTGTGTGGTGAAGAGGAAATTATGCGAATGGACAAAATTCAGAAGCATTTTGGGTCTGAAATAATTGAGGTTCGAGACTCCGACGAGGACATTCAAGCAGCCTTAAAAACTGCCGGATTGGTTTGA 1527 42.83 MADPASDSTTSNASASATATATNDAISAPPVVTPVPKRAWGDEEDDDVGDAGDSSSAPTEYLESLKIQDETTLEEPIDSDITAVTTGETPYTSASTFEDLNLSKELLKGLYVEMRFHKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQNIEVLKKMGKYTGITSECAIPADSANYVPMSKRPPITAQVVIGTPGTIKKWMTARKLGVSCVKILVFDEADHMLSEDGFQDDSLRIMRDIERSSPHCQVLLFSATFDENVKKFVSRVVKDYNQLFVKKEELSLESVKQFKLICPDELTKIRVIKDRIFELADKLGQTIIFVRTRNSAGMLHKALVDLGYDVTTIQGAMTNEIRDKIIKEFKDGLTKVLISTDLLARGFDQQQVNLVINYDLPLKYESSSQTTKYRFSSSADPNYEVYLHRIGRAGRFGRKGAVFNLLCGEEEIMRMDKIQKHFGSEIIEVRDSDEDIQAALKTAGLV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34554306 34557072 + ClCG10G019620.2 Cla10g01864 283523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01864 508 CDD SF2_C_DEAD 317 468 - -
Cla10g01864 508 Gene3D - 312 499 IPR027417 -
Cla10g01864 508 SMART ultradead3 115 320 IPR014001 -
Cla10g01864 508 SMART helicmild6 359 459 IPR001650 -
Cla10g01864 508 MobiDBLite consensus disorder prediction 1 60 - -
Cla10g01864 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 305 IPR014001 -
Cla10g01864 508 Pfam DEAD/DEAH box helicase 121 294 IPR011545 GO:0003676|GO:0005524
Cla10g01864 508 Pfam Helicase conserved C-terminal domain 331 459 IPR001650 -
Cla10g01864 508 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 74 490 - -
Cla10g01864 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 479 IPR027417 -
Cla10g01864 508 MobiDBLite consensus disorder prediction 1 27 - -
Cla10g01864 508 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 95 124 IPR014014 GO:0003724
Cla10g01864 508 Gene3D - 78 311 IPR027417 -
Cla10g01864 508 CDD DEADc_DDX19_DDX25 102 305 - -
Cla10g01864 508 PANTHER DEAD-BOX HELICASE DBP80 74 490 - -
Cla10g01864 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 499 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00806 Cla-Chr1:9464884 Cla10g01864 Cla-Chr10:34554306 0 dispersed
Cla10g01864 Cla-Chr10:34554306 Cla05g00180 Cla-Chr5:1625411 1.24E-54 dispersed
Cla10g01864 Cla-Chr10:34554306 Cla09g00073 Cla-Chr9:688045 4.51E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01864 K18655 - csv:101222195 878.626