Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01886 | ATGGCGAACCATTCAGTCCTTCTTGCATCATTCTTCTTCTTCCTCCTCCATTTTGGAGCTGAAGCTGCAACGATAACTGTGAAAAACAATTGTCCGAGAACCATATGGCCAGCAACATTAACGAGCGGTCCAGGACAACCCCAACTATCAACAACTGGTTTCGAGTTAGCTCCTGGAGCGTCAAAGTCATTTAATATCCCCGCACCATACACTGGTCGAGTATGGGCACGAACCGGATGCTCCAACAATGGTGGACGTATCACCTGCTTAACTGGAGATTGCGGTCGTGGCCTCTCATGCAATGGGGCCGGAGGAGTTCCACCAGTCACGCTAGCTGAATTCACCATTGCCCCGAACGGTGGCCAAGATTTCTACGATGTTAGCCTCGTGGATGGTTTCAACATTCCGGTCTCGATCACTACCCAAGGCGGCACAGGACCATGCCGATCCTCGAACTGTCGTGCCAACGTGAACCGTGTTTGTCCAGCGGAACTGCAGGTGAAATCAGGTAATGAAGTGATTGCTTGCAAGAGTGCTTGCCTTGCGTTCAACCAACCAAGGTATTGTTGCACCGGAGAATTCAATGACCCTAACAAGTGCAAGCCAACCAAATATTCAATGATCTTTGAGAACCAATGCCCAGAGGCTTACAGTTATGCATATGATGATAAAAACAGCACTTTTACTTGCAACAATAGACCAAATTATCTCATCACATTTTGCGGGGTAGTTTCGGAAGACGTGATATTCCACTTTGAGAACCAATGCCCATATTCAATATGGATATCCTCAAACCCACCCATCGGAGACGCCGACCCGGAGAGGCCACCTAACACTCTCGAGATCTTCAATATGCCTGACACGTGGACTGGCTCTCTGTGGGCCCGCACCAAATGCTCCAACGACCAAGACTATCATTTCTCCTGCCAAACCGGCGATTGCGGGTCAGGCACCATCTTCTGCGACTCCTCTCCACCGGCTCTCCCGGTCACCCTCCTCAACTTCGCCATCAACAACTCCGTCGTCCACTACCACCTCAGCCTCATCCACGGCTTCAACATTCCCGTCCTGTGA | 1074 | 50.37 | MANHSVLLASFFFFLLHFGAEAATITVKNNCPRTIWPATLTSGPGQPQLSTTGFELAPGASKSFNIPAPYTGRVWARTGCSNNGGRITCLTGDCGRGLSCNGAGGVPPVTLAEFTIAPNGGQDFYDVSLVDGFNIPVSITTQGGTGPCRSSNCRANVNRVCPAELQVKSGNEVIACKSACLAFNQPRYCCTGEFNDPNKCKPTKYSMIFENQCPEAYSYAYDDKNSTFTCNNRPNYLITFCGVVSEDVIFHFENQCPYSIWISSNPPIGDADPERPPNTLEIFNMPDTWTGSLWARTKCSNDQDYHFSCQTGDCGSGTIFCDSSPPALPVTLLNFAINNSVVHYHLSLIHGFNIPVL | 357 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 34759509 | 34765504 | - | ClCG10G019840.2 | Cla10g01886 | 283545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01886 | 357 | PANTHER | OS03G0233200 PROTEIN | 251 | 356 | IPR001938 | - | |
| Cla10g01886 | 357 | PANTHER | OS03G0233200 PROTEIN | 9 | 241 | IPR001938 | - | |
| Cla10g01886 | 357 | PANTHER | PRU PROTEIN, PUTATIVE-RELATED | 251 | 356 | - | - | |
| Cla10g01886 | 357 | PANTHER | PRU PROTEIN, PUTATIVE-RELATED | 9 | 241 | - | - | |
| Cla10g01886 | 357 | CDD | TLP-PA | 24 | 241 | - | - | |
| Cla10g01886 | 357 | SUPERFAMILY | Osmotin, thaumatin-like protein | 23 | 241 | IPR037176 | - | |
| Cla10g01886 | 357 | PRINTS | Pathogenesis-related protein signature | 73 | 84 | IPR001938 | - | |
| Cla10g01886 | 357 | PRINTS | Pathogenesis-related protein signature | 123 | 139 | IPR001938 | - | |
| Cla10g01886 | 357 | PRINTS | Pathogenesis-related protein signature | 232 | 241 | IPR001938 | - | |
| Cla10g01886 | 357 | PRINTS | Pathogenesis-related protein signature | 24 | 36 | IPR001938 | - | |
| Cla10g01886 | 357 | PRINTS | Pathogenesis-related protein signature | 85 | 114 | IPR001938 | - | |
| Cla10g01886 | 357 | ProSiteProfiles | Thaumatin family profile. | 22 | 241 | IPR001938 | - | |
| Cla10g01886 | 357 | Pfam | Thaumatin family | 29 | 241 | IPR001938 | - | |
| Cla10g01886 | 357 | Pfam | Thaumatin family | 254 | 356 | IPR001938 | - | |
| Cla10g01886 | 357 | Gene3D | Thaumatin | 23 | 241 | IPR037176 | - | |
| Cla10g01886 | 357 | SMART | tha2 | 25 | 242 | IPR001938 | - | |
| Cla10g01886 | 357 | Gene3D | Thaumatin | 249 | 357 | IPR037176 | - | |
| Cla10g01886 | 357 | SUPERFAMILY | Osmotin, thaumatin-like protein | 249 | 356 | IPR037176 | - | |
| Cla10g01886 | 357 | ProSiteProfiles | Thaumatin family profile. | 247 | 357 | IPR001938 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla04g00937 | Cla10g01886 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla08g00248 | Cla-Chr8:5083376 | Cla10g01886 | Cla-Chr10:34759509 | 1.58E-14 | dispersed | |
| Cla09g01491 | Cla-Chr9:28673697 | Cla10g01886 | Cla-Chr10:34759509 | 3.29E-16 | dispersed | |
| Cla09g01493 | Cla-Chr9:28754873 | Cla10g01886 | Cla-Chr10:34759509 | 3.29E-16 | dispersed | |
| Cla10g01886 | Cla-Chr10:34759509 | Cla10g00071 | Cla-Chr10:737763 | 7.90E-14 | dispersed | |
| Cla03g01143 | Cla-Chr3:23812812 | Cla10g01886 | Cla-Chr10:34759509 | 1.61E-11 | transposed | |
| Cla10g01886 | Cla-Chr10:34759509 | Cla04g00937 | Cla-Chr4:24382578 | 4.11E-13 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01886 | - | - | csv:101203304 | 451.44 |