Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01888 ATGAAATGGGCCTTGGCCCAAACTTGTCCTTCAAATTTCAGACCGTACAGAACTTTCACTTCGGCGATTCGCTTAGATAAACAGAGAAAGGGGGTTTTAGGTCGCCGGAAGGACGAAGAAGCTTTATCAGTCGGAAATCGGGATCCGGTAAAGAAGCAACGCCGAAGTTCGACGGCGATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCGGCACAAAATGAAGCTATCGATCGCAGAGAGCGTCTTCGACGGCTGGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTTATGCGGAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGTAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCTAAGAGGGCTGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGAACAATAGGAACAGTGAGGTTAAGATTCCTGCTTTTAAGTCAAGTAACATTCAAAGTTGGAAATGGCCAGTGTTCCGGGTTAAAATTGGAAGGCCTGGTTATCGAGTTACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGTTTTATGTCCTCTTACGAACAGCGTGTGCAACCTTTTGACAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATTGCATTCAAGAAATTAGAGTACATTTTTGTTATTCATTTGACACTCTTAGCCCTTTACCTACAATTAAGCTGTATCTTAGGAATTTGGCTTTTGCCCCTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAACGGAACAATGCCATCTGCTGCACCACCAAGGCCATTGCCGCCGCCACCACAAGCTCCACCACCGCCACCACCTCCACCACAGCAAGGAGCACCACCAAGAGTCCCTCCCCCTCCGATGCCTGGGTCCTTGCCACCTCCCCCTTCTGTAATGGCCAATGGTCCTCCTAGGCCAATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCGCCACCTCCAGTTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATCGACCTCCCATGCCACCTCCCCCACAGGGCTTCCCAGGTCAGGGTATCCGACAGCCGCCGCCACCACCACCCAATATGGGCTAG 1275 50.27 MKWALAQTCPSNFRPYRTFTSAIRLDKQRKGVLGRRKDEEALSVGNRDPVKKQRRSSTAMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNNRNSEVKIPAFKSSNIQSWKWPVFRVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKKLEYIFVIHLTLLALYLQLSCILGIWLLPLQLYFKSKPQEANKPPPVPAANGTMPSAAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34788309 34791598 - ClCG10G019870.2 Cla10g01888 283547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01888 424 Gene3D Classic Zinc Finger 105 148 - -
Cla10g01888 424 MobiDBLite consensus disorder prediction 34 61 - -
Cla10g01888 424 Gene3D - 174 260 - -
Cla10g01888 424 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 189 259 IPR031781 -
Cla10g01888 424 MobiDBLite consensus disorder prediction 298 424 - -
Cla10g01888 424 MobiDBLite consensus disorder prediction 144 166 - -
Cla10g01888 424 ProSiteProfiles Zinc finger matrin-type profile. 111 141 IPR000690 GO:0003676|GO:0005634|GO:0008270
Cla10g01888 424 MobiDBLite consensus disorder prediction 396 424 - -
Cla10g01888 424 PRINTS Proline rich extensin signature 298 319 - -
Cla10g01888 424 PRINTS Proline rich extensin signature 338 355 - -
Cla10g01888 424 PRINTS Proline rich extensin signature 360 385 - -
Cla10g01888 424 PRINTS Proline rich extensin signature 319 335 - -
Cla10g01888 424 PANTHER SPLICING FACTOR 3A SUBUNIT 2 60 259 - -
Cla10g01888 424 SMART CactinC_cactus_3 174 302 - -
Cla10g01888 424 MobiDBLite consensus disorder prediction 34 80 - -
Cla10g01888 424 SMART ZnF_U1_5 108 142 IPR003604 GO:0003676|GO:0008270
Cla10g01888 424 Pfam Zinc-finger of C2H2 type 111 135 - -
Cla10g01888 424 SUPERFAMILY beta-beta-alpha zinc fingers 107 142 IPR036236 -
Cla10g01888 424 MobiDBLite consensus disorder prediction 300 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01888 Cla-Chr10:34788309 Cla02g00488 Cla-Chr2:4790731 9.84E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01888 K12826 - csv:101202831 374.785