Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01892 ATGCCGTTTCAGAGGATAGTTATCGCCGTCGGCCGGCCGGAGGAGGCCACCCACCCCGCCGCCCTGAAGGCCGCCTTGGCCGAGTTCATTTCCACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTCACCCATAATTCTCCCACCAGCCCTACCGGCCTAATGAGCGCTTCCTTAGCTCATGGCTTTGCCCTTTTCGTCGGTGTCTCCACCGCCGCCAACATCTCCGGCGGCCACCTCAACCCTGCCGTCACTTTCGGGGCCTTGGTCGGCGGTAACATCACTATCCTCCGCGGGATTCTTTACTGGATCGCCCAGCTCCTCGGCGCTGTCGTCGCTAACTTGTTGCTCAAGTTCGTCATCGTCGACGTGGCTATTACGGGATTCTTGCCTACAGCAGGAGTGGGAGTATGGGAAGCATTTGTATTCGAGATCGCAATGACATTCGGATTAGTCTACACAGTATACGCCACCGCCATTGATCCCAAGAGAGGTGAGTTGGGAGTAATAGCACCCATTGCCATCGGTTTAATTGTGGCGGCCAACATTCTGGTGGGTGGCCCATTCACGGGAGCCTCCATGAACCCAGCAGTGGCCTTCGGACCTGCCCTGGTGTCTTGGTCTTGGGGTGACCATTGGATCTACTGGGCTGGCCCACTCATCGGCGGCGGCTTAGCCGGCATTGTGTATGAGCTCTTCTTCATTGGATTCACCCACCAGCCCTTGCCCGCTGCAGAGTACTGA 762 57.35 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTSPTGLMSASLAHGFALFVGVSTAANISGGHLNPAVTFGALVGGNITILRGILYWIAQLLGAVVANLLLKFVIVDVAITGFLPTAGVGVWEAFVFEIAMTFGLVYTVYATAIDPKRGELGVIAPIAIGLIVAANILVGGPFTGASMNPAVAFGPALVSWSWGDHWIYWAGPLIGGGLAGIVYELFFIGFTHQPLPAAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34818950 34821367 + ClCG10G019910.1 Cla10g01892 283551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01892 253 PANTHER AQUAPORIN TIP1-1 7 252 - -
Cla10g01892 253 CDD MIP 23 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01892 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01892 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01892 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01892 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01892 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01892 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01892 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01892 253 PANTHER AQUAPORIN-8 7 252 IPR034294 -
Cla10g01892 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Cla10g01892 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Cla10g01892 253 TIGRFAM MIP: MIP family channel proteins 27 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01892 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00933 Cla10g01892 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00167 Cla-Chr9:1719283 Cla10g01892 Cla-Chr10:34818950 9.40E-90 dispersed
Cla09g01964 Cla-Chr9:37240084 Cla10g01892 Cla-Chr10:34818950 2.39E-107 dispersed
Cla10g01436 Cla-Chr10:29546651 Cla10g01892 Cla-Chr10:34818950 8.29E-24 dispersed
Cla10g01892 Cla-Chr10:34818950 Cla02g02062 Cla-Chr2:35637260 1.31E-34 dispersed
Cla01g00487 Cla-Chr1:5236661 Cla10g01892 Cla-Chr10:34818950 4.48E-56 transposed
Cla01g01451 Cla-Chr1:29009237 Cla10g01892 Cla-Chr10:34818950 2.37E-92 transposed
Cla01g02344 Cla-Chr1:37213383 Cla10g01892 Cla-Chr10:34818950 3.51E-23 transposed
Cla05g00575 Cla-Chr5:5252238 Cla10g01892 Cla-Chr10:34818950 2.68E-20 transposed
Cla05g01171 Cla-Chr5:12728940 Cla10g01892 Cla-Chr10:34818950 1.63E-23 transposed
Cla07g01152 Cla-Chr7:28462158 Cla10g01892 Cla-Chr10:34818950 2.08E-21 transposed
Cla08g01226 Cla-Chr8:25167953 Cla10g01892 Cla-Chr10:34818950 3.40E-24 transposed
Cla10g01892 Cla-Chr10:34818950 Cla04g00933 Cla-Chr4:24297743 5.52E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01892 K09873 - csv:101222386 457.603