Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01908 ATGGCGATCACGCTGCGCAAATCTTTCAATTCCCAATCGCAGATTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTCCCTCATTCCTCTTTCGAAACTCCTCCTCTTTCCCTAACGCCCTCGCCCTCGCCGACTCCGACTCCGGCGAATCCTTAACTTTCCGTCAGCTTCAAATACAAGTCTCCAAGCTCGCCCATGTCTTCATCCAACTCGGGATTCGAAAAAGCGATGTGGTTCTCATATTCGCCCCTAATTCCATTCACTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCTGCTTACACTTTTGGGGAACTGTCAAAGCAAGTCGCTAACTGCAACCCCAAGCTCGTAATCACCGTTCCCGAACTCTGGGACACAATCGGTAAACTCAACTTGCCTTCTATAATTCTGGGATCTAAAATTTCTTCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCGATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCGCTTTTATATTCATCTGGGACGACTGGGATTAGTAAGGGAGTGATTCTAACTCACAGGAACTTCATAACTACCTCTTTAATGGTGACCCAAGATCAGGATCTTCTTGGTGATCCTAGAAACGTGTTTTTATGCTTTCTTCCAATGTTCCATGTGTTTGGTCTCTCTATAATTGTTTACTCGCAGCTTCAAAGAGGAAACACTGTCGTTTCGATGGCGAAGTTTGAGCTAGAAAAGGCTTTGGGGGTGGTGATGAAGTACAGGATCACTCATCTTTATGTTGTTCCACCTGTAATTATAGCTCTCACAAAGCAAAGTGTAGTGAAGAACTACGACTTGTCGTCGTTGAAGCAGATTTTATCTGGGGCAGCGCCTCTTGGGAAGGATGTGATGGAAGAATGCTCCAAGTTTATACCTCAGGCCAGGATCATCCAGGGATATGGCATGACAGAAACTTGTGGAGTTATTTCAGTGGGGAATGTGGGAGTAGAATCTACGCTATCTGGGGCAACTGGATCCCTTGTTTCAGGAGTTGAAGCGCAAGTTTTGAGTACAGAAACACAGAAACGTCTTCCACCCGGTGAAACAGGGGAAATTTGTGTGCGAGGACCAAATATGATGAAAGGATATTTCAACAATCAGGAAGCCACCAGCAAAACCATAGACGATCAGGGATGGGTACATACTGGAGATATAGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTTATCAAGTGTTATGGTTTTCAGGTTGCACCGGCAGAGCTTGAAGCATTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCATATCCTGATGATAAAGCTGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCACCCCATAGCTCGATAAAGGAAGAAGATGTTAAAAATTTTATTGCTGGGCAGGTTGCACCATATAAGAGATTAAAAAGAGTAACCTTCACAAGTAGTGTTCCGAAGTCGGTTTCGGGAAAACTTCTAAGAAGGGAGGTCATAGCACAAGTCCGTGCCAAGATGTAA 1638 45.12 MAITLRKSFNSQSQIYTSRRPPIHFPTDPTISIPSFLFRNSSSFPNALALADSDSGESLTFRQLQIQVSKLAHVFIQLGIRKSDVVLIFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFGELSKQVANCNPKLVITVPELWDTIGKLNLPSIILGSKISSKFSRPNIWGYSDLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITTSLMVTQDQDLLGDPRNVFLCFLPMFHVFGLSIIVYSQLQRGNTVVSMAKFELEKALGVVMKYRITHLYVVPPVIIALTKQSVVKNYDLSSLKQILSGAAPLGKDVMEECSKFIPQARIIQGYGMTETCGVISVGNVGVESTLSGATGSLVSGVEAQVLSTETQKRLPPGETGEICVRGPNMMKGYFNNQEATSKTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPYPDDKAGEVPIAFVVRSPHSSIKEEDVKNFIAGQVAPYKRLKRVTFTSSVPKSVSGKLLRREVIAQVRAKM 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34963679 34968296 + ClCG10G020080.1 Cla10g01908 283567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01908 545 Gene3D - 13 442 IPR042099 -
Cla10g01908 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Cla10g01908 545 Gene3D - 443 544 IPR045851 -
Cla10g01908 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 544 - -
Cla10g01908 545 SUPERFAMILY Acetyl-CoA synthetase-like 17 543 - -
Cla10g01908 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Cla10g01908 545 CDD 4CL 25 536 - -
Cla10g01908 545 Pfam AMP-binding enzyme 39 447 IPR000873 -
Cla10g01908 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 8 544 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02457 Cla-Chr1:38267201 Cla10g01908 Cla-Chr10:34963679 5.26E-30 dispersed
Cla03g00266 Cla-Chr3:3170022 Cla10g01908 Cla-Chr10:34963679 0 dispersed
Cla05g01306 Cla-Chr5:15838351 Cla10g01908 Cla-Chr10:34963679 1.32E-29 dispersed
Cla07g00213 Cla-Chr7:2301613 Cla10g01908 Cla-Chr10:34963679 4.02E-134 dispersed
Cla10g01908 Cla-Chr10:34963679 Cla11g01229 Cla-Chr11:25623628 2.14E-112 dispersed
Cla11g01330 Cla-Chr11:26773143 Cla10g01908 Cla-Chr10:34963679 1.01E-118 dispersed
Cla10g01908 Cla-Chr10:34963679 Cla09g00323 Cla-Chr9:3124225 7.29E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01908 K01904 - csv:101204417 992.26