Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01933 ATGGCGAACAACGACATCGAAATCGGAGGTCGGGGAGCGGCGTCGAGGAAGGACTATTTGGACCCGCTTCCGGCGCCCATGATCGACATGGAGGAGTTTACGAAATGGTCGTTTTACAGAGCTATCATTGCTGAATTTGTGGCGACTCTGTTGTTTCTATACGTCGCCGTTTTGACGGTGATCGGAAATAAAAGCCAGATGGACCCGCTGAACGGCGGGAATGTCTGCGGCGGAGTTGGCCCGGTCGGAATCTCGTGGGTCTTCGGCGGAATGATCTTCGTCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCAGCAGTGACATTCGGAATGTTTATGGCAAGAAAGATATCGCTGGTCCGCGCCTTGCTCTACATCATAGCTCAGTGCTTGGGGGCGCTGTGCGGCTGCGCCTTGGTCAAGACACTCCAAAGGGATCGCTACAACCACTACGGCGGTGGCGCGAACCAGCTTGTCGATGGTTACAGCCGAGGCACCGGCCTTGCCGTCGAGATTATGGGCACCTTTGTTCTTCTCTACACCGTCTTCTCCGCCACTGATCCTAAACGTAATGCCAGAGACTCCCATGTTCCCGTCTTGGCACCACTCCCCATTGGCTTCGCTGTCTTCATGGTTCACCTCGCTACGATTCCCGTCACCGGCACTGGCATCAACCCGGCTCGAAGCTTCGGTGCCGCCGTCATCATCAATGATCGGAAAGTTTGGAAAGATCATTGCCGATTGCTTTTTTCTGTGTTTGTCCCGCCGATTTTGGTCTACGCCTGCTATACAGTGGTTACTGCCGAGATCTGTGTTGCCGGATCCTTTTGTTGTGTGTTTTCGGTTCTCTTTGGATTGATAGAAGTTTTTTTTAGGGAGAATATGGCAACTAGAGGTCAAGGTGGTATCCAACAATTGCTTGCTGCGGAGCAAGAAGCACAACACATCGTCAATGCTGCCAGAAATGCAAAAATGGCTAGACTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCTGCATATCGCGCCCAAGTCGAGTCTGAATTCCAAAGAAAACTTGCTGAGAGTAGCGGAGATTCAGGAGCTAATGTTAAGCGGCTTGAGATCGAGACAGATGAAAAGATTTATCACCTGAAAGAAGAGTCTGCGAGAATTTCACACGACGTTGTGAACATGCTTCTGAAGCACGTGACAACCGTGAAAAATTGA 1224 50.82 MANNDIEIGGRGAASRKDYLDPLPAPMIDMEEFTKWSFYRAIIAEFVATLLFLYVAVLTVIGNKSQMDPLNGGNVCGGVGPVGISWVFGGMIFVLVYCTAGISGGHINPAVTFGMFMARKISLVRALLYIIAQCLGALCGCALVKTLQRDRYNHYGGGANQLVDGYSRGTGLAVEIMGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIINDRKVWKDHCRLLFSVFVPPILVYACYTVVTAEICVAGSFCCVFSVLFGLIEVFFRENMATRGQGGIQQLLAAEQEAQHIVNAARNAKMARLKQAKEEAEKEIAAYRAQVESEFQRKLAESSGDSGANVKRLEIETDEKIYHLKEESARISHDVVNMLLKHVTTVKN 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35173230 35180433 + ClCG10G020330.2 Cla10g01933 283592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01933 407 SUPERFAMILY Aquaporin-like 31 244 IPR023271 -
Cla10g01933 407 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01933 407 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01933 407 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01933 407 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01933 407 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01933 407 TIGRFAM MIP: MIP family channel proteins 44 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01933 407 TIGRFAM V_ATP_synt_G: V-type ATPase, G subunit 299 406 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cla10g01933 407 Gene3D - 297 407 - -
Cla10g01933 407 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Cla10g01933 407 Pfam Vacuolar (H+)-ATPase G subunit 304 406 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cla10g01933 407 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 280 IPR034294 -
Cla10g01933 407 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01933 407 Coils Coil 322 356 - -
Cla10g01933 407 Pfam Major intrinsic protein 32 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01933 407 PANTHER AQUAPORIN PIP2-4-RELATED 12 280 - -
Cla10g01933 407 ProSitePatterns MIP family signature. 106 114 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01933 Cla-Chr10:35173230 Cla04g00884 Cla-Chr4:23832679 6.19E-121 dispersed
Cla10g01933 Cla-Chr10:35173230 Cla02g02062 Cla-Chr2:35637260 5.73E-131 wgd
Cla10g01933 Cla-Chr10:35173230 Cla04g00881 Cla-Chr4:23808256 1.48E-117 wgd
Cla10g01933 Cla-Chr10:35173230 Cla05g02143 Cla-Chr5:33021643 7.62E-129 wgd
Cla10g01933 Cla-Chr10:35173230 Cla08g00761 Cla-Chr8:19975775 5.50E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01933 K09872 - csv:101214142 472.241