Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01937 | ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCTACTACCACTGCAGCCTTTGCTCACCAGCACGAGGATGCTAACCCTAACCCTAACCCTAAACCCAAACCCTCCGCTGCCGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATTGCTTTGTCGCCAAAATCGCTCATGGCAACGAATAGATTCATATGCGAAATTTGTAACAAGGGGTTTCAGAGAGACCAAAATCTGCAACTTCATCGACGAGGGCATAACCTACCATGGAAGTTGCGACAACGGACAAACAAGGAGCCAATCAAGAAGAAGGTGTATATTTGCCCAGAGAAGATGTGCGTACACCACGATCCGTCACGAGCCCTTGGCGACCTCACTGGAATAAAGAAACATTTCAGCCGGAAACACGGTGAGAAGAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCGACAAATATTCTCAATAATCTTAGAAATGATTCAAATATTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCATACAAATAATAATCTTCCATCTCTTGGAGATATTTCTGGGCTTTCCCAATTCAGTCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAGAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCAATCAACAACAACAACAATAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTTGGATCGATCACCGAAAACGGGCTTTCGATGTTGCCAGTGATTGAGAAGGAAGATGTTGAGAATAAGGGAAGTAATAATTTGTCGAAAGCTACATCGTCTTCCGCAGCAGCGCTGTTGTCGGGTCAGTCTTCTCAGTCTGTGGTTTCGTCTTCTCCGATGTCGGCGACCGCCCTTCTACAAAAAGCGGCTCTTATGGGCTCAACTAGAAGCAACAATAATAATTCCGTGCTCTTCGGTGCGGGTGCTTTTGGAGTAATGAGTTCTTCGTCGTCATCGTCTTCCAATGCAGTAAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATCGGTACGAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATACCACCCAACGCTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCGCCGGAGCTAGCAAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCACCAACCACTAA | 1482 | 43.99 | MSSNPFSLLSSTTTAAFAHQHEDANPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKMCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNILLHQQDQSLIDHHTNNNLPSLGDISGLSQFSHSDHFLRDFEDHQQKNRSPLSLWLNQASAETAINNNNNNISNFFGASSSSSNLFGSITENGLSMLPVIEKEDVENKGSNNLSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSNNNNSVLFGAGAFGVMSSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGTNSDLSSNCLSQLLIPPNANNGMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFATNH | 493 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 35207330 | 35209609 | - | ClCG10G020380.1 | Cla10g01937 | 283596 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01937 | 493 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 68 | 90 | IPR013087 | - | |
| Cla10g01937 | 493 | SUPERFAMILY | beta-beta-alpha zinc fingers | 67 | 165 | IPR036236 | - | |
| Cla10g01937 | 493 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cla10g01937 | 493 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Cla10g01937 | 493 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 412 | - | - | |
| Cla10g01937 | 493 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 70 | 90 | IPR013087 | - | |
| Cla10g01937 | 493 | Gene3D | Classic Zinc Finger | 123 | 202 | - | - | |
| Cla10g01937 | 493 | SMART | c2h2final6 | 68 | 90 | IPR013087 | - | |
| Cla10g01937 | 493 | SMART | c2h2final6 | 110 | 140 | IPR013087 | - | |
| Cla10g01937 | 493 | SMART | c2h2final6 | 145 | 165 | IPR013087 | - | |
| Cla10g01937 | 493 | Gene3D | Classic Zinc Finger | 47 | 121 | - | - | |
| Cla10g01937 | 493 | PANTHER | ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 | 1 | 412 | - | - | |
| Cla10g01937 | 493 | Pfam | Zinc-finger double-stranded RNA-binding | 68 | 90 | IPR022755 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla04g00874 | Cla10g01937 | CCT | |
| Cla04g00874 | Cla10g01937 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01891 | Cla-Chr1:33706688 | Cla10g01937 | Cla-Chr10:35207330 | 3.01E-113 | dispersed | |
| Cla07g01308 | Cla-Chr7:30249706 | Cla10g01937 | Cla-Chr10:35207330 | 7.17E-114 | dispersed | |
| Cla08g01505 | Cla-Chr8:27861370 | Cla10g01937 | Cla-Chr10:35207330 | 2.31E-107 | dispersed | |
| Cla09g00066 | Cla-Chr9:631084 | Cla10g01937 | Cla-Chr10:35207330 | 3.26E-109 | dispersed | |
| Cla09g00685 | Cla-Chr9:6586945 | Cla10g01937 | Cla-Chr10:35207330 | 4.25E-108 | dispersed | |
| Cla02g01009 | Cla-Chr2:18811623 | Cla10g01937 | Cla-Chr10:35207330 | 1.13E-108 | transposed | |
| Cla03g00219 | Cla-Chr3:2550923 | Cla10g01937 | Cla-Chr10:35207330 | 5.93E-112 | transposed | |
| Cla11g00071 | Cla-Chr11:967512 | Cla10g01937 | Cla-Chr10:35207330 | 2.32E-102 | transposed | |
| Cla10g01937 | Cla-Chr10:35207330 | Cla04g00874 | Cla-Chr4:23762728 | 3.33E-120 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61958 | PF12171 | zf-C2H2_jaz | 7.20E-05 | CL0361 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01937 | K25870 | - | csv:101213422 | 757.673 |