Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01937 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCTACTACCACTGCAGCCTTTGCTCACCAGCACGAGGATGCTAACCCTAACCCTAACCCTAAACCCAAACCCTCCGCTGCCGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATTGCTTTGTCGCCAAAATCGCTCATGGCAACGAATAGATTCATATGCGAAATTTGTAACAAGGGGTTTCAGAGAGACCAAAATCTGCAACTTCATCGACGAGGGCATAACCTACCATGGAAGTTGCGACAACGGACAAACAAGGAGCCAATCAAGAAGAAGGTGTATATTTGCCCAGAGAAGATGTGCGTACACCACGATCCGTCACGAGCCCTTGGCGACCTCACTGGAATAAAGAAACATTTCAGCCGGAAACACGGTGAGAAGAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCGACAAATATTCTCAATAATCTTAGAAATGATTCAAATATTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCATACAAATAATAATCTTCCATCTCTTGGAGATATTTCTGGGCTTTCCCAATTCAGTCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAGAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCAATCAACAACAACAACAATAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTTGGATCGATCACCGAAAACGGGCTTTCGATGTTGCCAGTGATTGAGAAGGAAGATGTTGAGAATAAGGGAAGTAATAATTTGTCGAAAGCTACATCGTCTTCCGCAGCAGCGCTGTTGTCGGGTCAGTCTTCTCAGTCTGTGGTTTCGTCTTCTCCGATGTCGGCGACCGCCCTTCTACAAAAAGCGGCTCTTATGGGCTCAACTAGAAGCAACAATAATAATTCCGTGCTCTTCGGTGCGGGTGCTTTTGGAGTAATGAGTTCTTCGTCGTCATCGTCTTCCAATGCAGTAAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATCGGTACGAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATACCACCCAACGCTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCGCCGGAGCTAGCAAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCACCAACCACTAA 1482 43.99 MSSNPFSLLSSTTTAAFAHQHEDANPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKMCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNILLHQQDQSLIDHHTNNNLPSLGDISGLSQFSHSDHFLRDFEDHQQKNRSPLSLWLNQASAETAINNNNNNISNFFGASSSSSNLFGSITENGLSMLPVIEKEDVENKGSNNLSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSNNNNSVLFGAGAFGVMSSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGTNSDLSSNCLSQLLIPPNANNGMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFATNH 493
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 35207330 35209609 - ClCG10G020380.1 Cla10g01937 283596
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01937 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Cla10g01937 493 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Cla10g01937 493 MobiDBLite consensus disorder prediction 1 20 - -
Cla10g01937 493 MobiDBLite consensus disorder prediction 1 52 - -
Cla10g01937 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 412 - -
Cla10g01937 493 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cla10g01937 493 Gene3D Classic Zinc Finger 123 202 - -
Cla10g01937 493 SMART c2h2final6 68 90 IPR013087 -
Cla10g01937 493 SMART c2h2final6 110 140 IPR013087 -
Cla10g01937 493 SMART c2h2final6 145 165 IPR013087 -
Cla10g01937 493 Gene3D Classic Zinc Finger 47 121 - -
Cla10g01937 493 PANTHER ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 1 412 - -
Cla10g01937 493 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla04g00874 Cla10g01937 CCT
Cla04g00874 Cla10g01937 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01891 Cla-Chr1:33706688 Cla10g01937 Cla-Chr10:35207330 3.01E-113 dispersed
Cla07g01308 Cla-Chr7:30249706 Cla10g01937 Cla-Chr10:35207330 7.17E-114 dispersed
Cla08g01505 Cla-Chr8:27861370 Cla10g01937 Cla-Chr10:35207330 2.31E-107 dispersed
Cla09g00066 Cla-Chr9:631084 Cla10g01937 Cla-Chr10:35207330 3.26E-109 dispersed
Cla09g00685 Cla-Chr9:6586945 Cla10g01937 Cla-Chr10:35207330 4.25E-108 dispersed
Cla02g01009 Cla-Chr2:18811623 Cla10g01937 Cla-Chr10:35207330 1.13E-108 transposed
Cla03g00219 Cla-Chr3:2550923 Cla10g01937 Cla-Chr10:35207330 5.93E-112 transposed
Cla11g00071 Cla-Chr11:967512 Cla10g01937 Cla-Chr10:35207330 2.32E-102 transposed
Cla10g01937 Cla-Chr10:35207330 Cla04g00874 Cla-Chr4:23762728 3.33E-120 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61958 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01937 K25870 - csv:101213422 757.673