Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01954 ATGGAGCTAGCGTTCTCAGACTTCAACATTCCTGGAGATATCTTGGATTTATACTTCCCCCGAACTGTCTTCACTGTCGAAAATGGATGGCTTAACCTCATTTCTCAGCTCATTTTATTTTTTTCTTCTCCGGCAGGTCGACATCTCTCTTCACAGGCTCTCGATGATGGTCGTGGCATCTTTATTTTGTCAATCGACTTTCAACAGTTCCGGAAGATTTGCGATCAACATGAGTTTTACATAATGCTAGAGGAAAATCCTAAAGTTGCTCTCAGATGTATGAGTGCTGCAATTCATCAGGTAATGAGGACCAAGTGGGCGAACAATTTAGAAGATGTCAGAAAAATTCTAGTCCGATTGCACAACTATTCAGAATCTATGCTTGTTTTGAAGAACTTGAAGGCCGCATATATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTTGTGCAAATGAGCTTTGATTGTGCTAAATGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGTTGTAAAAGCAAAACATTCAGTCCTGTTCGATCGACCGCTGAAGCAATTGACTTTCAAAAAATACGATTGCAAGAACTCACTAAATCTGATGATCATGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTAGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATTATAAGAGTAATTAATAATTATATGGATATTGGAGGAGGAAAATCGAAGAGCAAAAACCAAGGATTTTACTATTTGTATTTGGAGGCCGTTTCAATAAAAAATTCCAAGTCACAATCTACACCTGAGGAGTTGCAAGATTCTAACTCAAATGCAAGAGCAACCGAGCTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTTTCTGGGGAATGTGGTTCGGATGTCTTCCGTCAAATACTTCAATCCATTTGTCCATCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTTGTTGGTGATCCTGGACTTGGAAAAAGTCAACTCCTGCAAGCGGCTGCAGCTGTTTCTCCTCGTGGTATTTATGTTTGTGGTAATGCAACAACCAAGGCCGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGTTGTATAGATGAGTTCGATAAAATGTCTGCAGAGCATCAGGCCCTACTGGAAGCGATGGAACAACAATGTGTGTCAATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACTTCTATTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCCGCTCTTCTCTCGAGGTTTGATTTAGTTTTTATATTGCTGGATAAACCTGACGAAATTCTGGATAAGAGAGTCTCAGAGCACATCATGTCGGACGTGATGGAATTCTTTTTCTTGCAGCTTCATGCTGGATGTGGGGAACGCGCCTCTGCAGCAAAAGGACTACGTAAAGATATATCTCCTTTAACTTTAAAGAATGTAGCAATGGAGAATGATGGAAAAGGAGGTGGTGGTTCAAAACATGAGTCTTTAGTTTCAAGACTGAGATTGGACAAAGCGAAAGATGGTGATTTTGTACCATTACCAGGTCAACTTCTTCGCAAGTATATAGCCTATGCAAGAACTTTTGTATTCCCCAGACTAACTCCTAATAGATGCAAATATGCAACTGTGAATCGTGCAAGCCTCTTTACTCGAAATCTATCCAAACCCCCATCTCTCCATATTGGAATTAGGATGTCAAAGCCGGCAGCAGACATCTTGCAAAAATTTTATTTACATCTGCGTGACCAGAATACATCAGCAGATGGTACACCAATTACTGCAAGGCAATTGGAAAGTTTGGTGAGGTTGGCAGAAGCTCGAGCACGGGTAGACCTCAGAGAAGAAATTACAGTACAAGATGCCATGGATGTGGTGGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAAATGAACATGGGGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTCTGAGTGCACTCAACAAGCAATCAGAGTCGCAGCAGAAAGACTGTTTCTCTATCTCGGAAATATATAGCTTGGCAGATAAAATTGGTCTACGAGTACCTGACATCGATACCTTCATAGAAAATCTAAACAGTGTTGGATATCTGCTTAAGAAGGGGCCAAAGACATACCAGACATCTTTTTACAACAGGTCATGTCCTCATCGTACACCAGTCAATCAACAAGGTCAAGAGGATAAAATTAGGCGATATTGA 2538 41.17 MELAFSDFNIPGDILDLYFPRTVFTVENGWLNLISQLILFFSSPAGRHLSSQALDDGRGIFILSIDFQQFRKICDQHEFYIMLEENPKVALRCMSAAIHQVMRTKWANNLEDVRKILVRLHNYSESMLVLKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFSPVRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQSTPEELQDSNSNARATELLDLFSFSPRDLEFIVKFSGECGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSILAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEILDKRVSEHIMSDVMEFFFLQLHAGCGERASAAKGLRKDISPLTLKNVAMENDGKGGGGSKHESLVSRLRLDKAKDGDFVPLPGQLLRKYIAYARTFVFPRLTPNRCKYATVNRASLFTRNLSKPPSLHIGIRMSKPAADILQKFYLHLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVNEHGVLDFGRSGGMSQQKEAKRFLSALNKQSESQQKDCFSISEIYSLADKIGLRVPDIDTFIENLNSVGYLLKKGPKTYQTSFYNRSCPHRTPVNQQGQEDKIRRY 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35371168 35377615 + ClCG10G020570.2 Cla10g01954 283613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01954 845 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
Cla10g01954 845 Coils Coil 451 471 - -
Cla10g01954 845 CDD MCM8 340 733 - -
Cla10g01954 845 Gene3D - 130 260 IPR012340 -
Cla10g01954 845 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 10 823 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla10g01954 845 Gene3D - 314 744 IPR027417 -
Cla10g01954 845 PANTHER DNA HELICASE MCM8 10 823 - -
Cla10g01954 845 SMART AAA_5 380 532 IPR003593 -
Cla10g01954 845 Pfam MCM P-loop domain 334 545 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01954 845 SMART mcm 126 735 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla10g01954 845 MobiDBLite consensus disorder prediction 825 845 - -
Cla10g01954 845 Pfam MCM AAA-lid domain 664 734 IPR041562 -
Cla10g01954 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 737 IPR027417 -
Cla10g01954 845 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01954 845 Pfam MCM OB domain 130 259 IPR033762 -
Cla10g01954 845 Gene3D - 157 207 - -
Cla10g01954 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01954 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01954 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01954 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01954 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01539 Cla-Chr9:30466037 Cla10g01954 Cla-Chr10:35371168 1.49E-06 dispersed
Cla10g01954 Cla-Chr10:35371168 Cla11g00330 Cla-Chr11:3754092 3.96E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01954 K10737 - csv:101211972 1427.92