Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01956 ATGGTTGATATAAGAATCGGAGTTAATATTCGTGATTTCAATAGTGATGTCATGTTGACTATGAAGATGTTTTGTTATTTTGTTGAGCTTGTAAAGGTCATTGGCATCCATGAAGGAATTTCTAAAGCTCCTGAAGCTGGTAAACTCTCTTATCACTTAAAATCTCCAAATAGGATAAGTTCATTATGCAATCGTCTCCTTTCTCCTATCTTCACCATCGTCCGATTCCATTCCACCACTCCATTTCCACCCGATCTAAATCCTTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTTCTCCCACCAGGGTTTTGGTGAAGGATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACGGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGATGGCACGGTGCTCAAAGATCACGAGAAGGAGAGCAATGTTTTTCCATTTTCTTCAAGAGTAACTTGCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCCGCCGGGGGAGTTGCGTTCCGCCGTAGACGGAGAAGTTTTCTCCCTCACAAACTCTCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGAGGGTTAA 1059 44.19 MVDIRIGVNIRDFNSDVMLTMKMFCYFVELVKVIGIHEGISKAPEAGKLSYHLKSPNRISSLCNRLLSPIFTIVRFHSTTPFPPDLNPSLSRPNYKSSVFSHQGFGEGWLMLRRVPAEEAMRAASRVRGLMIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQAQHLMVPMQDGTVLKDHEKESNVFPFSSRVTCSGVLSLCFFIIVDVKRALQFRSPIKASAGGVAFRRRRRSFLPHKLSYFFIVLLEFRESSVCSAKEG 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35391106 35405714 - ClCG10G020590.2 Cla10g01956 283615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01956 352 PRINTS CCAAT-binding transcription factor subunit A signature 170 188 - -
Cla10g01956 352 PRINTS CCAAT-binding transcription factor subunit A signature 189 207 - -
Cla10g01956 352 PRINTS CCAAT-binding transcription factor subunit A signature 151 169 - -
Cla10g01956 352 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 132 259 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cla10g01956 352 SUPERFAMILY Histone-fold 132 227 IPR009072 GO:0046982
Cla10g01956 352 MobiDBLite consensus disorder prediction 210 230 - -
Cla10g01956 352 ProSitePatterns NF-YB/HAP3 subunit signature. 154 170 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla10g01956 352 MobiDBLite consensus disorder prediction 210 225 - -
Cla10g01956 352 PANTHER BNAA04G21250D PROTEIN 132 259 - -
Cla10g01956 352 Gene3D Histone, subunit A 130 256 IPR009072 GO:0046982
Cla10g01956 352 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 132 187 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00404 Cla-Chr10:5486885 Cla10g01956 Cla-Chr10:35391106 3.88E-44 dispersed
Cla10g00422 Cla-Chr10:5674336 Cla10g01956 Cla-Chr10:35391106 7.68E-34 dispersed
Cla02g02162 Cla-Chr2:36706590 Cla10g01956 Cla-Chr10:35391106 3.08E-07 transposed
Cla10g01956 Cla-Chr10:35391106 Cla02g01361 Cla-Chr2:27936449 9.77E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61960 PF00808 CBFD_NFYB_HMF 1.70E-21 CL0012 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01956 K08065 - csv:101212699 247.669