Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01959 ATGCTGGATCTTAACCTTGAAGTTGTTTCCTCCGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCCTCCGTCGTTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCCGATGAGGCGTTCCCGTTCACCTTTGTTAAAGACTCCGCGGTTCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTCGATGACCCCCGCGATCAGACGATGGAGCTCTTCCCATTAACAGGCGGGTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTGTGGCGGTGTGCCGGAGCGGCGAATAAACGCACCGCCGGCGCAGCAACAGCATCAGCCAATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGACGAACAGGAAGATGGGAATCACATATTTGGTTGCTTGAATTTGAATCCGCCATTTATACCATTCTTGAGTTCATATTCTGTTCGTTACAGGGACTGCGGGAAACAGGTTTATTTAGTCTTGTTCATAATCATGGCTATGCCTGTTTCTCTTTTCCTTCAGGTGGTTTCGATACTGCACATGCTGCTGCCAGGGCATATGATCGAGCGGCGATCAAGTTCCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTAACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGTCCGAAGTGAGAGCATTGGCATGTTTGGTAATGGTATTCATCGCAGCTCACACGACATCATTGTCGACAGAAGAGCTATGCTCCTCTGGCAGCCAGAGAACTCTGCTTCAGCAGCAATTAGATCATCTCAGCCATATAGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGGGCAACAGAGATGAGGATGGGGGTTGGGTCCTGGGAGTGGCAAATCCATGGCCACCCGAGTGAAACCTCTGTTCCACGCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCATCAACTGTCATTTCATCAGCATCCCCTGCTGAGTTGAGGAGAAAGCACCAGGTGGAAATGAAAGAAGAACACAACCCACAGTTCAATCAAAGGCATTCTTTGTTTCTGAAAGATTATAGATTACTGGATGTTGAGATGACTGACTTTAGTTCTCATCCAACTTCCCTTTTTAATAGCTGCATTGACAATGTTGTTATGTGA 1629 47.02 MLDLNLEVVSSESASDSVEMVTERFLQFPANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNADEAFPFTFVKDSAVQESLTAKSLCVFDDPRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYCGGVPERRINAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWLLEFESAIYTILEFIFCSLQGLRETGLFSLVHNHGYACFSFPSGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAALRCNGKEAVTNFEPSSYVAEMASETNTGENNQILDLNLGIAPPNLSDVRSESIGMFGNGIHRSSHDIIVDRRAMLLWQPENSASAAIRSSQPYSFAVPSNYHSSWNVSNSSFFPISRERATEMRMGVGSWEWQIHGHPSETSVPRFSAAASSGFPSSSSSSTVISSASPAELRRKHQVEMKEEHNPQFNQRHSLFLKDYRLLDVEMTDFSSHPTSLFNSCIDNVVM 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35434753 35438197 - ClCG10G020620.1 Cla10g01959 283618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01959 542 Gene3D AP2/ERF domain 159 252 IPR036955 GO:0003700|GO:0006355
Cla10g01959 542 Gene3D AP2/ERF domain 286 330 IPR036955 GO:0003700|GO:0006355
Cla10g01959 542 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 485 - -
Cla10g01959 542 SMART rav1_2 287 335 IPR001471 GO:0003700|GO:0006355
Cla10g01959 542 SMART rav1_2 160 257 IPR001471 GO:0003700|GO:0006355
Cla10g01959 542 SUPERFAMILY DNA-binding domain 221 252 IPR016177 GO:0003677
Cla10g01959 542 MobiDBLite consensus disorder prediction 134 160 - -
Cla10g01959 542 CDD AP2 286 331 IPR001471 GO:0003700|GO:0006355
Cla10g01959 542 MobiDBLite consensus disorder prediction 37 62 - -
Cla10g01959 542 SUPERFAMILY DNA-binding domain 286 330 IPR016177 GO:0003677
Cla10g01959 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 485 - -
Cla10g01959 542 ProSiteProfiles AP2/ERF domain profile. 160 251 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01959 Cla-Chr10:35434753 Cla08g01641 Cla-Chr8:29034235 5.90E-33 dispersed
Cla10g01959 Cla-Chr10:35434753 Cla02g02027 Cla-Chr2:35285902 1.74E-100 wgd
Cla10g01959 Cla-Chr10:35434753 Cla02g01360 Cla-Chr2:27922666 1.42E-46 wgd
Cla10g01959 Cla-Chr10:35434753 Cla04g00866 Cla-Chr4:23672593 6.26E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01959 K09284 - csv:101211242 726.087