Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01964 ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGATCAACGGCGGTACTTTAATAAGCCATCTGGTTTTTGAAATCTACTTTGAATTTTGCTCTGCATTGAAGCTGTATAATAAACTTCTTCAGTACAATGGCGATTTCAGGACTGACGGGAAACTAAAAACAAATTCCTCCTTCAGTGAAAACTCCAAAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGAGAAGGAGGTTTTGGTAGAGTTTACAAGGGAAAGTTAGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTCGCAAGGGAACAGAGAGTTTCTTGTTGAAGTATTGATGTTAAGCCTGCTTCATCACCCAAATCTAGTTAATCTGATCGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAGGTTCTAGATTGGAATACAAGGATGAAAATAGCTGCTGGGGCAGCACGAGGGTTGGAATATTTGCATGACAAAGCTAGCCCGCCGGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAACTATCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGCGCTCCCGAGTATGCAATGACTGGTCAGTTAACTCTCAAGTCGGATGTTTATAGCTTCGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAGAATCTGGTTTCTTGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCTCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCCGTAATTGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACAACCCTGGTACGAACATACCCCACGACTCCCCTGGATCTGCTTGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGGTTAATGGGGGTAGAAGATACGACAGAAATCCAACTAAACGACTATAA 1296 42.21 MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPINGGTLISHLVFEIYFEFCSALKLYNKLLQYNGDFRTDGKLKTNSSFSENSKGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGSQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYNPGTNIPHDSPGSACTPPRTNRDSDRKVNGGRRYDRNPTKRL 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35470374 35473735 + ClCG10G020680.2 Cla10g01964 283623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01964 431 Gene3D Phosphorylase Kinase; domain 1 80 183 - -
Cla10g01964 431 CDD STKc_IRAK 113 381 - -
Cla10g01964 431 Gene3D Transferase(Phosphotransferase) domain 1 184 395 - -
Cla10g01964 431 MobiDBLite consensus disorder prediction 409 431 - -
Cla10g01964 431 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Cla10g01964 431 MobiDBLite consensus disorder prediction 392 408 - -
Cla10g01964 431 ProSiteProfiles Protein kinase domain profile. 107 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01964 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Cla10g01964 431 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 419 - -
Cla10g01964 431 MobiDBLite consensus disorder prediction 392 431 - -
Cla10g01964 431 PANTHER OS07G0668900 PROTEIN 1 419 - -
Cla10g01964 431 SMART serkin_6 107 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01964 431 Pfam Protein tyrosine and serine/threonine kinase 112 380 IPR001245 GO:0004672|GO:0006468
Cla10g01964 431 SUPERFAMILY Protein kinase-like (PK-like) 90 381 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00205 Cla-Chr3:2310996 Cla10g01964 Cla-Chr10:35470374 0 dispersed
Cla05g00626 Cla-Chr5:5770602 Cla10g01964 Cla-Chr10:35470374 0 dispersed
Cla09g00842 Cla-Chr9:8661899 Cla10g01964 Cla-Chr10:35470374 9.80E-167 dispersed
Cla10g00517 Cla-Chr10:6839670 Cla10g01964 Cla-Chr10:35470374 5.06E-166 dispersed
Cla10g01964 Cla-Chr10:35470374 Cla11g01825 Cla-Chr11:31921672 5.44E-158 dispersed
Cla01g00115 Cla-Chr1:1015685 Cla10g01964 Cla-Chr10:35470374 2.92E-55 transposed
Cla03g00818 Cla-Chr3:10425546 Cla10g01964 Cla-Chr10:35470374 3.05E-66 transposed
Cla05g02574 Cla-Chr5:36971065 Cla10g01964 Cla-Chr10:35470374 2.64E-66 transposed
Cla10g01964 Cla-Chr10:35470374 Cla02g02022 Cla-Chr2:35223744 1.02E-35 wgd
Cla10g01964 Cla-Chr10:35470374 Cla02g01354 Cla-Chr2:27804754 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80886 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01964 - - csv:101211491 717.227