Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01965 ATGGCTACTCCAATTGTCGTATCGGAAGTTCGTCCGCCGTCATTGGAAGCCGACGCCGAACAACCTCCCCTCTTCGACGGAACCACCAGGTTGTATATGGCTTACTATTGCCCATTCGCACAGCGTGCTTGGATTACAAGAAATTACAAGGGATTAGAGGATAAAATTAAATTAGTGCCTCTAAACCTTCAAAACAGGCCTGCTTGGTATAAGGAAAAAGTCTACCCAACAAACAAGGTGCCAGCATTGGAACACAATGGAAAAGTTATTGGAGAAAGCCTTGATTTGATCAAATACATAGATAGCAACTTTGAAGGGCCTTCTCTTTTTCCAGATGTGGATATTGCATACATCACATTTATTGAAAGATTCCATGTGTTCTTAAATGAAGTTTTCAAGTATGATATCATAGAAGGAAGACCTAATCTAGCTGCATGGATTGAGAAGTTCAACAAGATTAATACTTACAAGCAAACAAAATATGATCCTAAAGCTATTGTTGAATATTACACAAAGCGCTTTCTAGTACCATATGCCGTGGAAGAGGTTCTACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTATATACTGCTTACATATGCCCCTATGCTCAACGTGTGTGGATCACCCGAAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTCTATAACAGGCCTGACTGGTATAAGGAGAAAGTATACCCTATAAACAAGGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACGTTTAACATCGCAGTAGCTTCTTCATTTAAAGGCGACACCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCCTTCTTCCTTGGAGAGATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCAGGTTTTCTTATTAGAGGCTCTCAAGATTGACATCACAGAAGGAAGGCCGAAGCTAGCTGCATGGATTGAGGAGCTCAATAAGATTGATGCATACAAGCAAACAAAAGCTGATCCCAAGCTAATTGTTGAAGCTTATACAAAGCGATTTTTGCAATTAGTCTGTGTAAGTCAGTCGATCGTGGAAGAAATTCCACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCCCTGTTTGATGGAACTACCAGGTTGTATACTGCTTACATTTGCCCTTATGCACACCGTGTTTGGATCATCCGGAATTACAAGGGACTACAACATAAAATAAAGCTTGTTCCTCTCAATCTTATTAATAGGCCTGACTGGTATAAGGAGAAAGTGTACCCTATGAACAAGGTGCCATCTCTGGAACATAATGGAAAAGTTATCGGAGAAAGCCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGGACCTTCTCTACTCCCAGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACGGCGAAACGTTTAACGGCGCAATAATCGATTCGTTTAAAGGTGACACCGCTAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGGGAAAATTTGATGGCCCGTTCCTCCTTGGAGAAATCAGCCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTTTCTTATTAGAGGCTCTCAAAATTGACATCACAGAAGGAAGGCCTAAATTACTTGCCTGGATTGAGGGGTTCAATAAGATTGATGCGTACAAGCAAACAAAAGTTGATCCCAAGTTGGTCGTTGAAATTTATTCAATGCGATTCTTGAGAGAGAAAGAGAGAAGGAGAGACCGAAGAAACCGATCTGTTAGCGAAGATCAAGTTCCATTTGGGGATCCTCCATATTTGTTGAGAAAATCACGAAATCTTGCAGACCTCCACCCGCTAATGGCGGAGAGGAGCATTCAAATGCTCCACATTCTCGAGCCGAGAAGGGATGCCTATGGATTTGCTCTGAGACCTCAACACACGCATAGATATAGAGAGCATGCTAACATTTACAAGGAGGAGGAAGAGGAAAGGTGTGATAAGTGGAAGAACTTTCTTGATCAAGTAGCTACATCAGTTCAAGTGTGTCCTCTTGAGGAGGCAAATACAAATACACTGCAGGCTGAAACTAGCGAGCACCAAGAAGAGACCGTATCGGGGAGGAGTAGCACAGGGGATGACTCAACTGGCTCAAAATCTGATTCTGTTGACACCACAGATAGTGTTCCTACAAAACTCTTAGAGCCTCCAGTAGAAACACAAAAACGTGTTGTTCAGACTTGGTGTCAAACTAGGCCGTCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGAAGATTATGAAAGATGAAAAGACAAGTAATGGTGGAAATCATCTTCCACTGCTAGAGGAGGCAGAATCTTTAGAAGGAACATCTGTGGCAAACTCTGAAGAGGAAGAAGCTTGCTTCAGTGGAGCACTAAATCATAGTACATCTGCTACTGGGGCAGAAAGTAGGATGGACGAATCCATTTCTAACAGTGTGAAGCCCTCCGAGAGAGATGGTGTTGTGGGGGATGGAGTTTCTCAAGATCAATTGTTTACATGGAAAGAAGAATTAGAATGCCTTGTTCGTGGGGGGTTGCCAAAAGATCTGAGGGGAGAGGTGTGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATTGAGAAATATTACCAGGATTTGTTGGACCAAGAAACTAATTGTAGTGCAGATAACGAGAACAATATCCCATCTGGTGTACCGATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGGACATTTCCTGGTCATCCTGCCCTGGATGAGAATGGTAGAGACTCCTTAAGGCGTTTACTTTTAGCATATGCTCTTCACAATCCCTCTGTTGGCAATGAATTTCTTTGCGGGCTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGTGGACCAGCTTGTTTTTGAGGAATTGATGCGTGAAAGATTTCCTAAATTGGTTAAACATTTGGATTACTTGGGAGTGCAAGTGGCATGGATCACAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGAGTCATGCTGTTCCGGACAGCACTTGCATTGATGGAACTATATGGTCCTGCATTAGTTACTACAAAAGATGCGGGGGACGCCATAACTCTGTTACAATCCCTTGCTGGTTCCACATTTGATAGTAGCCAGCTTGTGTTGACTGCTTGCATGGGTTTTCTGACTGTAACTGAAGTAAGACTAGTAGAGTTGAGAGAAAAGCTCCGACCATCTGTGCTAGCTGTAATTGAAGAAAGAACAAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTATAGTTTCAAGCATGATCCCAGATCACCTATGGAGAGGAAAAAGACAGCTGCAGGATCCGATGTCGGATCCTGTACCCCTAATCTGGATGACTTCCTTAGTGGATTAGCCGGTGATTCAGAAACAGAATCACTCCCAGACCTTCAAGAACAAGTAGTATGGTTGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAAAAAAGATCTGCGGTTCTAAGAGCCGAGGAGCTAGAAACAGCACTTATGGAAATGGTCACCCAAGATAATCGACGACTATTAAGTGCCAGGGTTGAACAACTGGAGATAGAGGTAGCCGAGCTAAAGAAAACTCTAGCAGAGAAGAAAGAACAAGAAGTTGCAATGCTTCAGTTGTTGATGCGTGTTGAGCAAGAGCAAAGAGTAACCGAGGAAGCTAGAATAAACGCCGAGCAAGACGTAGCAGCTCAAAAATATGCTGTTCATATGCTTCAGGATAAATATGAGAAAGCTATGGCTTCACTTGCCGAGATGGAGAAAAGGGTGGTGATGGCCGAATCCATGTTGGAGGCTACATTACAATATGAATCTGGCCAAGTTAAAGCAATGTCATCTCCTGGGTCGCGTAATCAAGGATCTGCACAGGAAAATCAAAGAAAGGTTGGTTTGCTGCCATTTGCACTAGGCTGGCGAGATCGAAACAAGCTTGAATTTCTATTCTCAAATTGGGTCGACTGGCGTAGCTTAGAGGATCTTTCTTTTAGTTTTCTTCACATTAGCAGAATGGAAAGGCTTTTTCTTTGGGTGAAGAACCTTAATTTCAGAGTGAAGTTCCAACAGCTAAGTGACCCGTTCAGTGTTATGGACAGGTGGGGATTTAAT 4341 42.99 MATPIVVSEVRPPSLEADAEQPPLFDGTTRLYMAYYCPFAQRAWITRNYKGLEDKIKLVPLNLQNRPAWYKEKVYPTNKVPALEHNGKVIGESLDLIKYIDSNFEGPSLFPDVDIAYITFIERFHVFLNEVFKYDIIEGRPNLAAWIEKFNKINTYKQTKYDPKAIVEYYTKRFLVPYAVEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLYNRPDWYKEKVYPINKDPAKREYAEELLSYSDTFNIAVASSFKGDTAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERFQVFLLEALKIDITEGRPKLAAWIEELNKIDAYKQTKADPKLIVEAYTKRFLQLVCVSQSIVEEIPPPSLDATAEQPPLFDGTTRLYTAYICPYAHRVWIIRNYKGLQHKIKLVPLNLINRPDWYKEKVYPMNKVPSLEHNGKVIGESLDLLKYIDSNFEGPSLLPDPAKREYAEELLSYGETFNGAIIDSFKGDTAKEAGAQFDYLENALGKFDGPFLLGEISQVDIAYIPFVERFHIFLLEALKIDITEGRPKLLAWIEGFNKIDAYKQTKVDPKLVVEIYSMRFLREKERRRDRRNRSVSEDQVPFGDPPYLLRKSRNLADLHPLMAERSIQMLHILEPRRDAYGFALRPQHTHRYREHANIYKEEEEERCDKWKNFLDQVATSVQVCPLEEANTNTLQAETSEHQEETVSGRSSTGDDSTGSKSDSVDTTDSVPTKLLEPPVETQKRVVQTWCQTRPSLNAIEIMMSSRVKKKIMKDEKTSNGGNHLPLLEEAESLEGTSVANSEEEEACFSGALNHSTSATGAESRMDESISNSVKPSERDGVVGDGVSQDQLFTWKEELECLVRGGLPKDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNCSADNENNIPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLLAYALHNPSVGNEFLCGLVATPDARGECLLVDQLVFEELMRERFPKLVKHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLVELREKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPRSPMERKKTAAGSDVGSCTPNLDDFLSGLAGDSETESLPDLQEQVVWLKVELCRLLEEKRSAVLRAEELETALMEMVTQDNRRLLSARVEQLEIEVAELKKTLAEKKEQEVAMLQLLMRVEQEQRVTEEARINAEQDVAAQKYAVHMLQDKYEKAMASLAEMEKRVVMAESMLEATLQYESGQVKAMSSPGSRNQGSAQENQRKVGLLPFALGWRDRNKLEFLFSNWVDWRSLEDLSFSFLHISRMERLFLWVKNLNFRVKFQQLSDPFSVMDRWGFN 1447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35475347 35502003 - ClCG10G020690.1 Cla10g01965 283624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01965 1447 Pfam Glutathione S-transferase, N-terminal domain 31 107 IPR004045 -
Cla10g01965 1447 Pfam Glutathione S-transferase, N-terminal domain 408 484 IPR004045 -
Cla10g01965 1447 Pfam Glutathione S-transferase, C-terminal domain 285 347 - -
Cla10g01965 1447 Pfam Glutathione S-transferase, C-terminal domain 521 583 - -
Cla10g01965 1447 SUPERFAMILY GST C-terminal domain-like 482 609 IPR036282 -
Cla10g01965 1447 SUPERFAMILY GST C-terminal domain-like 252 373 IPR036282 -
Cla10g01965 1447 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 27 108 IPR004045 -
Cla10g01965 1447 SUPERFAMILY Thioredoxin-like 399 486 IPR036249 -
Cla10g01965 1447 MobiDBLite consensus disorder prediction 846 871 - -
Cla10g01965 1447 Gene3D Glutaredoxin 379 482 - -
Cla10g01965 1447 Gene3D Glutaredoxin 3 104 - -
Cla10g01965 1447 MobiDBLite consensus disorder prediction 738 759 - -
Cla10g01965 1447 MobiDBLite consensus disorder prediction 722 768 - -
Cla10g01965 1447 Coils Coil 1251 1306 - -
Cla10g01965 1447 Gene3D - 105 178 - -
Cla10g01965 1447 SMART tbc_4 891 1089 IPR000195 -
Cla10g01965 1447 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 1004 1117 IPR035969 -
Cla10g01965 1447 Coils Coil 1314 1341 - -
Cla10g01965 1447 Pfam Glutathione S-transferase, N-terminal domain 209 245 IPR004045 -
Cla10g01965 1447 Gene3D - 483 612 - -
Cla10g01965 1447 Gene3D - 246 376 - -
Cla10g01965 1447 SUPERFAMILY Thioredoxin-like 195 246 IPR036249 -
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 179 255 - -
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L1 179 255 IPR044629 GO:0004364
Cla10g01965 1447 SFLD Glutathione Transferase (cytosolic) 407 583 IPR040079 -
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L1 113 175 IPR044629 GO:0004364
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L1 380 610 IPR044629 GO:0004364
Cla10g01965 1447 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 404 485 IPR004045 -
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 252 374 - -
Cla10g01965 1447 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 911 994 - -
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L1 4 112 IPR044629 GO:0004364
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L1 252 374 IPR044629 GO:0004364
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 4 112 - -
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 380 610 - -
Cla10g01965 1447 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 113 175 - -
Cla10g01965 1447 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 879 1025 IPR035969 -
Cla10g01965 1447 Gene3D - 1000 1135 - -
Cla10g01965 1447 CDD GST_C_Lambda 253 369 - -
Cla10g01965 1447 Pfam Rab-GTPase-TBC domain 1007 1083 IPR000195 -
Cla10g01965 1447 Pfam Rab-GTPase-TBC domain 898 986 IPR000195 -
Cla10g01965 1447 ProSiteProfiles TBC/rab GAP domain profile. 894 1065 IPR000195 -
Cla10g01965 1447 SUPERFAMILY GST C-terminal domain-like 113 174 IPR036282 -
Cla10g01965 1447 SUPERFAMILY Thioredoxin-like 21 109 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01965 Cla-Chr10:35475347 Cla05g00390 Cla-Chr5:3521607 7.92E-08 dispersed
Cla02g00936 Cla-Chr2:14626085 Cla10g01965 Cla-Chr10:35475347 8.40E-28 transposed
Cla02g01353 Cla-Chr2:27774726 Cla10g01965 Cla-Chr10:35475347 0 transposed
Cla04g00882 Cla-Chr4:23816583 Cla10g01965 Cla-Chr10:35475347 1.43E-09 transposed
Cla10g01965 Cla-Chr10:35475347 Cla02g01351 Cla-Chr2:27759167 9.32E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01965 - - bhj:120091064 1267.29