Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01967 ATGGGTGATGATGATAAGGTGATTGGAAATGCTCAGTCTGTTCCTGGAAGATGGCACAGAAGCAAAGGCCAAACCCATAAATCCCAGATTCAAGAAACTCCTGTAATTTTGTGTCCAGTGACTGGCCTTTTAGAAAAAATGGTTAAACCCTGCTGGAAGCCTCATGATGATGGCGATTCAAACGGACGAGTTGATGGGTTGTTGTGGTCTAAGGATCTGGGGCACCATGTTTATGGACAATTCTCCATGGCAGTAATCCAAGCCAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCGTTGAGTATGACCAATCCAGGTCCGCAGGGGACCTTTGTAGGAGTTTATGATGGCCATGGCGGAACCGAAGCTTCACGGTTTGTCAATGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTACACCAAGACATATCAGAAAACGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTAGGGATCATATGCAATGGACAGCTATATATTGCAAATGCAGGCGATTCACGAGTAGTGCTGGGGAGAACTGAGAGAGCCACTAGAGAAGTCATTGCCATTCAATTGTCCACAGAACACAATGCAAGCATAGAGTCTGTGAGAGATGAACTTCGGATGGTTCATCCAGAAGATCCCCAGATTGTGATCCTAAAGCACAATGTTTGGCGTGTTAAAGGTCTCATACAGGTTTCAAGATCCATTGGTGATGCATATTTGAAAAAAGCAAAGTTCAATAGACCTCCTCTCCCGCCTAAATTTCAACTGCCTGAGCCATTTTACAAACCGATCCTCAGCGCAGAACCGTCAATACTGGTACACAAACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGTCTGTGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCCCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCAAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGCAGGCCCTCCCCTTGTTCCTTATCAATCAAAGGAGGAGAAGGTCTCCCCTCATCGGCAAACTCCTAG 1251 44.6 MGDDDKVIGNAQSVPGRWHRSKGQTHKSQIQETPVILCPVTGLLEKMVKPCWKPHDDGDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMTNPGPQGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQDISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATREVIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSLSIKGGEGLPSSANS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35506658 35509314 - ClCG10G020710.2 Cla10g01967 283626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01967 416 SMART PP2C_4 58 386 IPR001932 -
Cla10g01967 416 MobiDBLite consensus disorder prediction 1 30 - -
Cla10g01967 416 ProSiteProfiles PPM-type phosphatase domain profile. 80 388 IPR001932 -
Cla10g01967 416 ProSitePatterns PPM-type phosphatase domain signature. 114 122 IPR000222 GO:0043169
Cla10g01967 416 SUPERFAMILY PP2C-like 79 390 IPR036457 -
Cla10g01967 416 PANTHER ALPHABET, ISOFORM E-RELATED 49 410 - -
Cla10g01967 416 Pfam Protein phosphatase 2C 110 357 IPR001932 -
Cla10g01967 416 CDD PP2Cc 78 388 IPR001932 -
Cla10g01967 416 PANTHER PROTEIN PHOSPHATASE 2C 67-RELATED 49 410 - -
Cla10g01967 416 Gene3D - 69 395 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00051 Cla-Chr10:559323 Cla10g01967 Cla-Chr10:35506658 1.68E-173 dispersed
Cla10g01669 Cla-Chr10:32406360 Cla10g01967 Cla-Chr10:35506658 1.51E-121 dispersed
Cla10g01967 Cla-Chr10:35506658 Cla02g01350 Cla-Chr2:27751689 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01967 K01102 - csv:101210750 738.413