Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01969 ATGAGGAATGCGAAGCCCAAAAACCTTCAAACCTCAGTTCCCGCCAGCGTCTTTCTTCCATGGGCTCTGCAGGCGCTCCACCGCACCGACGGGATGAATTACGGCGCTTATGGCCGCCTTATCCAGCTCTGCACCGACCACCTCTTCGTCCGCCTCGGTAAGCAGCTTCACGCTCGTCTTGTTCTATCCTCCGTCGCTCCCGATAACTTCCTCGGATCGAAACTCATCGCCTTCTACTCAAAATCCGGCAGCCTTAGAGATGCCTACAATGTGTTCGGTAAAATTTCTCACAAAAATATTTTCAGTTGGAATGCTTTGTTCATCAGTTACACTCTTCACAATATGCACACTGATATGCTGAAGCTGTTTTCGTCTTTGGTTAATTCAAATTCGACGGATGTGAAGCCCGATAAGTTTACTGTCACTTGTGTTTTGAAAGCGTTGGCGTCTTTGTTTTCTAATTCGGTTTTGGCTAAGGAAGTTCATTGTTTCATTCTTCGACGAGGGCTTGAGTCTGATATTTTTGTTGCCAATGCTTTGATCACTTTTTACTCGAGGTGCGATGAGCTGGTTTTAGCAAGAATTATGTTTGATAGAATGCCTGGGAGAGATATAGTGTCTTGGAATGCGATGTTGGCTGGGTACTCTCAGGCTGGGCTCTATGAGGAGTGCAAGAAACTATTTAAAGCGATGTTGAGTTCAGTGGAGCTGAAGCCTAATGCATTAACCGCAGTCAGTGTTTTGCAAGCTTGTGCTCAGTCAAATGATCTCATTTTTGGAATGGAAGTTCACAGATTCGTCAATGAAAGCCAGGTTGTAATGGATGTTTCACTATGCAATGCTGTTATTGGATTATATGCAAAGTGTGGTAGCTTGGATTATGCTCGTGAGTTGTTTGAAGAAATGCCTGAGAAGGATGAGGTCACCTATGGCGCTATGATATCAGGCTACATGGTCCATGGTTTTGTTAACCAAGCAATGGATCTTTTTCGAGAACTGGAAAGGCCAGCATTGAGCACATGGAATGCTGTGATTTCTGGTCTGGTTCAGAACAACCAGCAAGATAGAGTCGTAGATATATTTCGAGCAATGCAGTCACATGGTTGCAGACCAAATACCGTGACTCTTGCGAGCGTTCTTCCCGTTTTCTCACATTTTTCAACCCTGAAAGGTGGGAAAGAAATTCATGCTTATGCCATTAGAAACGCTTACAATGGGAATATTTATGTTGCTACTGCCATCATCGATTCTTATGCTAAGTCTGGTTACCTCCATGGGGCACGACAAGTTTTTGATCAAATAAAAGGTAGGAGTCTAATCATCTGGACAGCAATAATCTCAGCATATGCTGCACATGGAGATGCCAATGTGGCTCTTAGTCTTTTCTATGAGATGCTGACAAACGGGATTCAGCCTGACCCGGTAACCTTTACATCAGTATTGGTTGCCTGTGCCCATTCAGGAGAGTTAGATGAAGCCTGGAAGATATTTAATGTCTTGTTACTAGAGTATGGGATTCAACCACTAGTCGAGCATTATGCTTGCATGGTAGGAGTCCTTAGTCGAGCAGGAAAGCTCTCTAATGCTGTTGAATTTATTTCTAAAATGCCATTTGAACCCACCGCAAAAGTTTGGGGTGCTTTGCTCAATGGGGCTTCTGTTGCTGGTGATGTTGAACTTGGAAAGTATGTTTTTGATCGTCTCTTTGAGATTGAGCCTGAAAATACTGGTAACTACATCATCATGGCTAACTTATATTCACAATTTGGAAGGTGGAAAGAAGCTGACAAGATTAGGAATTTGATGAAGGAAGTTGGATTGAAGAAGATCCCGGGAAGTAGCTGGATAGAAACAAGGGGAGGGTTGCAGAGTTTTGTAGCTAGAGACACTTCAAATGACAGGACTCCAGAGATCTATGGAATGTTGGAAGGATTACTTGGGTTGATGAAAGAAGAAGGAATCATTCTGCAACATGAGATAGATGACGACTGTGGGAGTGTGAAGGAGCAATACGGCTCACGAGATCCCATAATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATTTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACACTCTTCTCCCTCACTCTTCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCACCATCCAAGCTCCTCCCTTACCACCCTTCCACCGCCGCCATCTCCCCTCAAGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCGATCACCAAATGGCGTGCGACCCTCTGTAGAATCTACTCCGATTCCCTCTTGACGATCTCAGGTGTCGCCACAGGCGGGGGTGGGGCTTTGATTCCGTTCATTGAGACGGTGGTGAGATGTTGGAAGTTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCGTCTCCTGTGGCGGTGGTGGAGCTGCCGTCAGTGGCGGTGGGTGGTGGCGGTGGTGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAACGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGAGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACGATGTGTCCATCTGATGGAGATTAA 2886 48.06 MRNAKPKNLQTSVPASVFLPWALQALHRTDGMNYGAYGRLIQLCTDHLFVRLGKQLHARLVLSSVAPDNFLGSKLIAFYSKSGSLRDAYNVFGKISHKNIFSWNALFISYTLHNMHTDMLKLFSSLVNSNSTDVKPDKFTVTCVLKALASLFSNSVLAKEVHCFILRRGLESDIFVANALITFYSRCDELVLARIMFDRMPGRDIVSWNAMLAGYSQAGLYEECKKLFKAMLSSVELKPNALTAVSVLQACAQSNDLIFGMEVHRFVNESQVVMDVSLCNAVIGLYAKCGSLDYARELFEEMPEKDEVTYGAMISGYMVHGFVNQAMDLFRELERPALSTWNAVISGLVQNNQQDRVVDIFRAMQSHGCRPNTVTLASVLPVFSHFSTLKGGKEIHAYAIRNAYNGNIYVATAIIDSYAKSGYLHGARQVFDQIKGRSLIIWTAIISAYAAHGDANVALSLFYEMLTNGIQPDPVTFTSVLVACAHSGELDEAWKIFNVLLLEYGIQPLVEHYACMVGVLSRAGKLSNAVEFISKMPFEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYIIMANLYSQFGRWKEADKIRNLMKEVGLKKIPGSSWIETRGGLQSFVARDTSNDRTPEIYGMLEGLLGLMKEEGIILQHEIDDDCGSVKEQYGSRDPIMEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQPPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSLLTISGVATGGGGALIPFIETVVRCWKFVGFVGSCGGKARREVAASPVAVVELPSVAVGGGGGAAVECVICKEEMREGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCPSDGD 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35519472 35525916 - ClCG10G020730.1 Cla10g01969 283628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01969 961 SUPERFAMILY TPR-like 450 598 IPR011990 GO:0005515
Cla10g01969 961 Pfam Ring finger domain 887 929 IPR001841 -
Cla10g01969 961 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 858 935 IPR013083 -
Cla10g01969 961 Pfam PPR repeat 308 335 IPR002885 -
Cla10g01969 961 Pfam PPR repeat 279 305 IPR002885 -
Cla10g01969 961 Pfam PPR repeat 412 437 IPR002885 -
Cla10g01969 961 PANTHER BNAA04G21330D PROTEIN 29 662 - -
Cla10g01969 961 PANTHER OS01G0913400 PROTEIN-RELATED 29 662 - -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 234 IPR002885 -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 508 IPR002885 -
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 260 334 IPR011990 GO:0005515
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Cla10g01969 961 Pfam PPR repeat family 339 379 IPR002885 -
Cla10g01969 961 Pfam PPR repeat family 204 252 IPR002885 -
Cla10g01969 961 Pfam PPR repeat family 440 485 IPR002885 -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 415 574 IPR011990 GO:0005515
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 23 152 IPR011990 GO:0005515
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 335 391 IPR011990 GO:0005515
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 153 259 IPR011990 GO:0005515
Cla10g01969 961 ProSiteProfiles Zinc finger RING-type profile. 888 929 IPR001841 -
Cla10g01969 961 SUPERFAMILY RING/U-box 882 935 - -
Cla10g01969 961 SMART ring_2 888 928 IPR001841 -
Cla10g01969 961 Pfam E motif 557 617 IPR046848 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 278 305 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 308 334 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 441 473 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01969 - - - bhj:120091750 1202.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01969 Cla-Chr10:35519472 Cla03g00705 Cla-Chr3:8532878 1.24E-128 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00460 . 77 596 C3H Transcription Factor Family AT2G31510 70.8 2.8e-220 761.5
Cla11g00869 . 82 541 C3H Transcription Factor Family AT2G31510 73.3 4.2e-208 721.1
Cla08g00460 . 60 552 C3H Transcription Factor Family AT2G31770 56.2 1.4e-164 576.6
Cla11g00869 . 51 515 C3H Transcription Factor Family AT2G31770 52.4 1.0e-146 517.3
Cla08g00460 . 60 559 C3H Transcription Factor Family AT2G31760 54.8 2.1e-162 569.3
Cla11g00869 . 65 500 C3H Transcription Factor Family AT2G31760 54.3 2.7e-149 525.8
Cla01g01481 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.5e-47 186.4
Cla01g01481 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.5e-47 186.4
Cla11g00466 . 333 551 C3H Transcription Factor Family AT3G02290 62.6 5.4e-73 271.2
Cla06g01069 . 34 338 C3H Transcription Factor Family AT1G11020 75.3 5.3e-135 477.6
Cla07g01390 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 4.1e-68 255.0
Cla04g00220 . 93 453 C3H Transcription Factor Family AT5G08750 61.0 6.4e-121 431.0
Cla10g00873 . 77 501 C3H Transcription Factor Family AT3G16090 71.8 6.8e-166 580.9
Cla11g00466 . 329 551 C3H Transcription Factor Family AT5G38895 56.3 3.7e-70 262.3
Cla08g01518 . 23 234 C3H Transcription Factor Family AT1G19310 66.8 1.3e-79 293.1
Cla01g01589 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 2.1e-69 259.2
Cla01g01866 . 100 387 C3H Transcription Factor Family AT2G22120 70.7 3.2e-128 455.3
Cla08g01070 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.2e-40 161.8
Cla06g01484 . 30 426 C3H Transcription Factor Family AT1G18470 68.0 2.6e-158 555.4
Cla01g00581 . 81 312 C3H Transcription Factor Family AT1G68200 50.2 5.0e-50 195.3
Cla08g00460 . 60 552 C3H Transcription Factor Family AT2G31770 56.2 1.4e-164 576.6
Cla11g00869 . 51 515 C3H Transcription Factor Family AT2G31770 52.4 1.0e-146 517.3
Cla08g00460 . 60 559 C3H Transcription Factor Family AT2G31760 54.8 2.1e-162 569.3
Cla11g00869 . 65 500 C3H Transcription Factor Family AT2G31760 54.3 2.7e-149 525.8
Cla09g02094 . 114 346 C3H Transcription Factor Family AT5G55970 67.8 5.0e-93 338.2
Cla04g00220 . 93 453 C3H Transcription Factor Family AT5G63780 57.2 8.2e-116 414.1
Cla10g01676 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 1.0e-104 377.5
Cla09g02094 . 116 415 C3H Transcription Factor Family AT4G26580 62.3 5.2e-109 391.3
Cla07g00504 . 1 503 C3H Transcription Factor Family AT5G01960 53.0 3.5e-134 475.3
Cla02g01065 . 51 205 C3H Transcription Factor Family AT2G04240 59.3 8.3e-44 173.7
Cla02g02217 . 71 315 C3H Transcription Factor Family AT5G19430 53.3 3.0e-64 242.3
Cla07g01061 . 188 606 C3H Transcription Factor Family AT5G45290 55.4 2.6e-105 379.8
Cla02g02217 . 110 315 C3H Transcription Factor Family AT5G12310 56.4 2.9e-59 225.7
Cla06g01384 . 413 705 C3H Transcription Factor Family AT5G05810 52.8 3.9e-74 275.8
Cla11g00617 . 53 219 C3H Transcription Factor Family AT5G05830 65.3 2.0e-58 222.6
Cla10g02055 CCT,ECH 70 215 C3H Transcription Factor Family AT5G05830 58.2 3.2e-45 178.7
Cla04g00736 CCT,ECH 38 168 C3H Transcription Factor Family AT5G05830 61.8 3.1e-40 162.2
Cla11g00466 . 333 551 C3H Transcription Factor Family AT5G15790 59.6 3.0e-71 265.4
Cla11g00648 CCT,ECH 493 764 C3H Transcription Factor Family AT3G55530 80.2 5.2e-115 411.0
Cla09g00626 . 85 357 C3H Transcription Factor Family AT1G63900 75.5 9.6e-117 416.8
Cla05g00288 . 61 443 C3H Transcription Factor Family AT2G44580 53.7 3.4e-120 428.7
Cla08g01518 . 32 157 C3H Transcription Factor Family AT1G74990 59.8 9.5e-41 163.3
Cla05g01648 . 142 422 C3H Transcription Factor Family AT5G20910 61.8 3.0e-95 345.5
Cla10g00873 . 195 487 C3H Transcription Factor Family AT1G65040 68.8 2.0e-105 379.4
Cla01g01589 . 17 227 C3H Transcription Factor Family AT2G23780 62.1 1.1e-73 273.5
Cla08g01518 . 13 236 C3H Transcription Factor Family AT2G23780 57.0 7.2e-70 260.8
Cla10g01555 CCT 1 317 C3H Transcription Factor Family AT3G10810 53.6 2.3e-81 300.1
Cla01g00245 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.0e-45 179.1
Cla05g00192 . 49 376 C3H Transcription Factor Family AT1G68070 50.2 1.0e-88 323.9
Cla01g00642 CCT 18 307 C3H Transcription Factor Family AT1G68070 60.2 3.4e-87 318.9
Cla11g01841 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.7e-51 198.7
Cla10g00012 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 5.0e-45 177.9
Cla08g01288 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 1.0e-111 400.6
Cla10g00012 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.4e-39 157.9
Cla08g00460 . 77 596 C3H Transcription Factor Family AT2G31510 70.8 2.8e-220 761.5
Cla11g00869 . 82 541 C3H Transcription Factor Family AT2G31510 73.3 4.2e-208 721.1
Cla01g01481 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.1e-54 210.3
Cla10g01731 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.2e-41 164.9
Cla04g00105 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 5.0e-151 530.8
Cla05g00970 . 666 923 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.1
Cla05g00969 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 1.0e-127 453.4
Cla02g02306 . 174 470 C3H Transcription Factor Family AT2G41980 71.8 3.9e-127 451.4
Cla01g00756 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 4.7e-125 444.5
Cla06g00118 . 43 301 C3H Transcription Factor Family AT2G41980 74.9 9.9e-123 436.8
Cla05g02675 . 48 259 C3H Transcription Factor Family AT2G41980 68.5 3.5e-96 348.6
Cla05g00579 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.7e-95 345.9
Cla06g01657 CCT 43 333 C3H Transcription Factor Family AT3G47990 63.9 2.9e-111 398.7
Cla01g01293 CCT 348 613 C3H Transcription Factor Family AT3G47990 57.7 1.0e-87 320.5
Cla11g01841 . 4 185 C3H Transcription Factor Family AT1G20823 56.0 4.5e-52 201.4
Cla10g00012 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.3e-46 183.3
Cla09g01740 . 37 405 C3H Transcription Factor Family AT3G18930 54.4 3.2e-84 309.3
Cla10g00050 . 20 235 C3H Transcription Factor Family AT5G66070 75.0 3.3e-75 278.5
Cla10g01969 . 680 950 C3H Transcription Factor Family AT5G02750 53.4 6.4e-68 254.6
Cla06g01484 . 34 504 C3H Transcription Factor Family AT1G73950 66.2 2.4e-178 622.1
Cla08g00174 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.6e-39 157.9
Cla01g00642 CCT 15 256 C3H Transcription Factor Family AT2G01735 59.6 3.9e-72 268.5
Cla10g00333 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.4e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008074 1 4 0 0 1 1 2 1 1 1 1 0 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 0 34