Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01969 ATGAGGAATGCGAAGCCCAAAAACCTTCAAACCTCAGTTCCCGCCAGCGTCTTTCTTCCATGGGCTCTGCAGGCGCTCCACCGCACCGACGGGATGAATTACGGCGCTTATGGCCGCCTTATCCAGCTCTGCACCGACCACCTCTTCGTCCGCCTCGGTAAGCAGCTTCACGCTCGTCTTGTTCTATCCTCCGTCGCTCCCGATAACTTCCTCGGATCGAAACTCATCGCCTTCTACTCAAAATCCGGCAGCCTTAGAGATGCCTACAATGTGTTCGGTAAAATTTCTCACAAAAATATTTTCAGTTGGAATGCTTTGTTCATCAGTTACACTCTTCACAATATGCACACTGATATGCTGAAGCTGTTTTCGTCTTTGGTTAATTCAAATTCGACGGATGTGAAGCCCGATAAGTTTACTGTCACTTGTGTTTTGAAAGCGTTGGCGTCTTTGTTTTCTAATTCGGTTTTGGCTAAGGAAGTTCATTGTTTCATTCTTCGACGAGGGCTTGAGTCTGATATTTTTGTTGCCAATGCTTTGATCACTTTTTACTCGAGGTGCGATGAGCTGGTTTTAGCAAGAATTATGTTTGATAGAATGCCTGGGAGAGATATAGTGTCTTGGAATGCGATGTTGGCTGGGTACTCTCAGGCTGGGCTCTATGAGGAGTGCAAGAAACTATTTAAAGCGATGTTGAGTTCAGTGGAGCTGAAGCCTAATGCATTAACCGCAGTCAGTGTTTTGCAAGCTTGTGCTCAGTCAAATGATCTCATTTTTGGAATGGAAGTTCACAGATTCGTCAATGAAAGCCAGGTTGTAATGGATGTTTCACTATGCAATGCTGTTATTGGATTATATGCAAAGTGTGGTAGCTTGGATTATGCTCGTGAGTTGTTTGAAGAAATGCCTGAGAAGGATGAGGTCACCTATGGCGCTATGATATCAGGCTACATGGTCCATGGTTTTGTTAACCAAGCAATGGATCTTTTTCGAGAACTGGAAAGGCCAGCATTGAGCACATGGAATGCTGTGATTTCTGGTCTGGTTCAGAACAACCAGCAAGATAGAGTCGTAGATATATTTCGAGCAATGCAGTCACATGGTTGCAGACCAAATACCGTGACTCTTGCGAGCGTTCTTCCCGTTTTCTCACATTTTTCAACCCTGAAAGGTGGGAAAGAAATTCATGCTTATGCCATTAGAAACGCTTACAATGGGAATATTTATGTTGCTACTGCCATCATCGATTCTTATGCTAAGTCTGGTTACCTCCATGGGGCACGACAAGTTTTTGATCAAATAAAAGGTAGGAGTCTAATCATCTGGACAGCAATAATCTCAGCATATGCTGCACATGGAGATGCCAATGTGGCTCTTAGTCTTTTCTATGAGATGCTGACAAACGGGATTCAGCCTGACCCGGTAACCTTTACATCAGTATTGGTTGCCTGTGCCCATTCAGGAGAGTTAGATGAAGCCTGGAAGATATTTAATGTCTTGTTACTAGAGTATGGGATTCAACCACTAGTCGAGCATTATGCTTGCATGGTAGGAGTCCTTAGTCGAGCAGGAAAGCTCTCTAATGCTGTTGAATTTATTTCTAAAATGCCATTTGAACCCACCGCAAAAGTTTGGGGTGCTTTGCTCAATGGGGCTTCTGTTGCTGGTGATGTTGAACTTGGAAAGTATGTTTTTGATCGTCTCTTTGAGATTGAGCCTGAAAATACTGGTAACTACATCATCATGGCTAACTTATATTCACAATTTGGAAGGTGGAAAGAAGCTGACAAGATTAGGAATTTGATGAAGGAAGTTGGATTGAAGAAGATCCCGGGAAGTAGCTGGATAGAAACAAGGGGAGGGTTGCAGAGTTTTGTAGCTAGAGACACTTCAAATGACAGGACTCCAGAGATCTATGGAATGTTGGAAGGATTACTTGGGTTGATGAAAGAAGAAGGAATCATTCTGCAACATGAGATAGATGACGACTGTGGGAGTGTGAAGGAGCAATACGGCTCACGAGATCCCATAATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATTTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACACTCTTCTCCCTCACTCTTCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCACCATCCAAGCTCCTCCCTTACCACCCTTCCACCGCCGCCATCTCCCCTCAAGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCGATCACCAAATGGCGTGCGACCCTCTGTAGAATCTACTCCGATTCCCTCTTGACGATCTCAGGTGTCGCCACAGGCGGGGGTGGGGCTTTGATTCCGTTCATTGAGACGGTGGTGAGATGTTGGAAGTTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCGTCTCCTGTGGCGGTGGTGGAGCTGCCGTCAGTGGCGGTGGGTGGTGGCGGTGGTGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAACGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGAGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACGATGTGTCCATCTGATGGAGATTAA 2886 48.06 MRNAKPKNLQTSVPASVFLPWALQALHRTDGMNYGAYGRLIQLCTDHLFVRLGKQLHARLVLSSVAPDNFLGSKLIAFYSKSGSLRDAYNVFGKISHKNIFSWNALFISYTLHNMHTDMLKLFSSLVNSNSTDVKPDKFTVTCVLKALASLFSNSVLAKEVHCFILRRGLESDIFVANALITFYSRCDELVLARIMFDRMPGRDIVSWNAMLAGYSQAGLYEECKKLFKAMLSSVELKPNALTAVSVLQACAQSNDLIFGMEVHRFVNESQVVMDVSLCNAVIGLYAKCGSLDYARELFEEMPEKDEVTYGAMISGYMVHGFVNQAMDLFRELERPALSTWNAVISGLVQNNQQDRVVDIFRAMQSHGCRPNTVTLASVLPVFSHFSTLKGGKEIHAYAIRNAYNGNIYVATAIIDSYAKSGYLHGARQVFDQIKGRSLIIWTAIISAYAAHGDANVALSLFYEMLTNGIQPDPVTFTSVLVACAHSGELDEAWKIFNVLLLEYGIQPLVEHYACMVGVLSRAGKLSNAVEFISKMPFEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYIIMANLYSQFGRWKEADKIRNLMKEVGLKKIPGSSWIETRGGLQSFVARDTSNDRTPEIYGMLEGLLGLMKEEGIILQHEIDDDCGSVKEQYGSRDPIMEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQPPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSLLTISGVATGGGGALIPFIETVVRCWKFVGFVGSCGGKARREVAASPVAVVELPSVAVGGGGGAAVECVICKEEMREGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCPSDGD 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35519472 35525916 - ClCG10G020730.1 Cla10g01969 283628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01969 961 SUPERFAMILY TPR-like 450 598 IPR011990 GO:0005515
Cla10g01969 961 Pfam Ring finger domain 887 929 IPR001841 -
Cla10g01969 961 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 858 935 IPR013083 -
Cla10g01969 961 Pfam PPR repeat 308 335 IPR002885 -
Cla10g01969 961 Pfam PPR repeat 279 305 IPR002885 -
Cla10g01969 961 Pfam PPR repeat 412 437 IPR002885 -
Cla10g01969 961 PANTHER BNAA04G21330D PROTEIN 29 662 - -
Cla10g01969 961 PANTHER OS01G0913400 PROTEIN-RELATED 29 662 - -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 234 IPR002885 -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 508 IPR002885 -
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 260 334 IPR011990 GO:0005515
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Cla10g01969 961 Pfam PPR repeat family 339 379 IPR002885 -
Cla10g01969 961 Pfam PPR repeat family 204 252 IPR002885 -
Cla10g01969 961 Pfam PPR repeat family 440 485 IPR002885 -
Cla10g01969 961 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 415 574 IPR011990 GO:0005515
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 23 152 IPR011990 GO:0005515
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 335 391 IPR011990 GO:0005515
Cla10g01969 961 Gene3D Tetratricopeptide repeat domain 153 259 IPR011990 GO:0005515
Cla10g01969 961 ProSiteProfiles Zinc finger RING-type profile. 888 929 IPR001841 -
Cla10g01969 961 SUPERFAMILY RING/U-box 882 935 - -
Cla10g01969 961 SMART ring_2 888 928 IPR001841 -
Cla10g01969 961 Pfam E motif 557 617 IPR046848 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 278 305 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 308 334 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Cla10g01969 961 TIGRFAM PPR: pentatricopeptide repeat domain 441 473 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01969 Cla-Chr10:35519472 Cla03g00705 Cla-Chr3:8532878 1.24E-128 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01969 - - bhj:120091750 1202.96