Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01978 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATTCCATTTCCAGGTATTCCATCTCGTCGCCGTCCAGAACTCCGGCATCGACTCCACGCCGGAGCTTCAACGACGCGATGATCGAACAGAGCATCGAATCTGCCGCGGCGATTGTGATGAAATGGAATCCAGATTCTTCAACGTACGCCAAAGTTACTTCCATGTTCTATGAAGACAAAAGAGAAGCCATGCAGTTCATTAAGCGTGTGAATGATCTTCAAAAAGCGATGCATCTTATTGCTTCGGAAGATTCCGCTTCCGCTTCCGATCGCCTTGTTTACGCTCAAACTTTGATGGAAATCGCCATGAAAAGACTTCAGAAGGAGTTTTATCAGATTCTCTCCATGAATCGTGCTCATCTAGATCCGGAATCTGTTTCCACTAGATCCTCTCGCTGCTCCACCAGATCGAGCACTTCCGTTGATTTCGACGATGACGGAACCCTAGACGATGAAATCCAAGCCATAGACGATTCGATCTCTGAAGTTGAGCAAGTTTCTTTCATTGTAATGGAGGATTTACGAGCCATAGCCGAGTGTATGATCTCCTCTGGCTACGCTAAAGAATGCGTTAATATGTATAAAGTGATTCGAAAATCGATTATCGATGAAGGTGTGTACCGCCTCGGACTTGAGAAATTGAGCGCTTCGAGAATCAACAAAATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATTAAACTCGCAATTAGAACGTTGTTCGTTGGCGAACGAATTCTCTGTGATCACGTCTTTTCCTCTTCTGAATCCATTAGAGAATCATGTTTTGCTGATATATCTAGAGAAGGCGCTCTGCTTCTGTTTGGATTCCCTGAACTTGTTGCAAAGAGTAAAAAGTCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCTCCGAAAATTGGCCGGACATCGAATCGATTTTCTCGTCTGAATCCTCATCTGTAGTTCGATCTCAAGCTCTAACCTCACTCGCGAAACTCGGCGAGTTAGTCCGGGCCATAGTTATGGATCTCGAAGTCTCGATTCAGAAAAACTCATCCAAATCGCCGGTTGCTGGGGGTGGCGTTCATTCCTTAACGCTTCTCTCGATGAACTACCTCACTTTCCTCGCCGATTACGGCAATATTTTGACGGATATTTTCGCTGATTGGACTCCGCCTGAAAAATCCTCTCTCGAACAAATCTTCTTCAACAGTTCAGAATCCGACGATTCTCCAACGGCTTCAGCAATCTCTTTACGAATGGGATGGCTAATTCTAGTCCTCCTCTGCAAACTCGACAGCAAAGCAAAGCGCTACAATGACGTTTCACTCTCGTATCTGTTCCTCGCTAACAATCTTCAACACATCGTCTCTAAAGTCCGATCGTCGAATCTTCAGTACCTTCTCGGCGACGAGTGGATCACGAAGCAGGAGGCGAAAGTAAGGCAATTCGCGGCGAAGTACGAAGCATTGGCTTGGGGAAGAGTCTTCGATTCTTTGCCGGAGAATCCAACTGAGAGATTCTCACAGGAAGAAGCCAAAGAAATCTTCAGGAATTTCAATATGGCATTCCAAGAAACTCATCGGAAACAGAAATCTTTCTTCATTCCTGATTCAAAGCTTAGAGACGAAGTTAAATTATCAATCGGTAGAAAGCTTGTTTGGTTCTATGGAGAATTTTACAGAGCGCAAAAAGCTTATGCTGGTGGTAATGAAAAGCCGTACATCAGATTCTCCCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTTGAACCGTCCGATTGGGCGAGCGTTTCCACCTCGTCGCCGTCGTCCACCTCCTCCTCTCACCGGCGGGAACCGGGACCCCAAGCCAAAGAAATCTTCAGGAATTTCAATATGGCATTCCAAGAAACTCATCGGAAACAGAAATCTTTCTTCATTCCTGATTCAAAGCTTAGAGACGAAGTTAAATTATCAATCGGTAGAAAGCTTGTTTGGTTCTATGGAGAATTTTACAGAGCGCAAAAAGCTTATGCTGGTGGTAATGAAAAGCCGTACATCAGATTCTCCCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTTGAACCGTCCGATTGGGCGAGCGTTTCCACCTCGTCGCCGTCGTCCACCTCCTCCTCTCACCGGCGGGAACCGGGACCCCGTTAA 2241 45.47 MPRKGMRSLLFQFSSPSNSISRYSISSPSRTPASTPRRSFNDAMIEQSIESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLIASEDSASASDRLVYAQTLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDDDGTLDDEIQAIDDSISEVEQVSFIVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSISENWPDIESIFSSESSSVVRSQALTSLAKLGELVRAIVMDLEVSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYGNILTDIFADWTPPEKSSLEQIFFNSSESDDSPTASAISLRMGWLILVLLCKLDSKAKRYNDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWITKQEAKVRQFAAKYEALAWGRVFDSLPENPTERFSQEEAKEIFRNFNMAFQETHRKQKSFFIPDSKLRDEVKLSIGRKLVWFYGEFYRAQKAYAGGNEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPQAKEIFRNFNMAFQETHRKQKSFFIPDSKLRDEVKLSIGRKLVWFYGEFYRAQKAYAGGNEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35632510 35640899 - ClCG10G020830.1 Cla10g01978 283637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01978 746 PANTHER EXOCYST COMPLEX PROTEIN EXO70 636 729 IPR004140 GO:0000145|GO:0006887
Cla10g01978 746 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 622 IPR004140 GO:0000145|GO:0006887
Cla10g01978 746 SUPERFAMILY Cullin repeat-like 75 611 IPR016159 -
Cla10g01978 746 SUPERFAMILY Cullin repeat-like 628 718 IPR016159 -
Cla10g01978 746 Gene3D Exocyst complex component Exo70 63 615 - -
Cla10g01978 746 MobiDBLite consensus disorder prediction 724 746 - -
Cla10g01978 746 Pfam Exo70 exocyst complex subunit 249 609 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cla10g01978 746 Pfam Exo70 exocyst complex subunit 615 716 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cla10g01978 746 Gene3D Exocyst complex component Exo70 616 718 - -
Cla10g01978 746 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 636 729 - -
Cla10g01978 746 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 5 622 - -
Cla10g01978 746 MobiDBLite consensus disorder prediction 18 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00844 Cla-Chr4:23466318 Cla10g01978 Cla-Chr10:35632510 2.29E-10 dispersed
Cla10g01978 Cla-Chr10:35632510 Cla07g01376 Cla-Chr7:30912560 1.27E-09 dispersed
Cla11g00577 Cla-Chr11:6536478 Cla10g01978 Cla-Chr10:35632510 1.87E-15 dispersed
Cla10g01975 Cla-Chr10:35597697 Cla10g01978 Cla-Chr10:35632510 2.13E-58 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01978 K07195 - csv:101208543 1097.42