Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01990 ATGGAGTTTTCAAACTGTCGTCTCGTTTTCCCGGACAAAACCCTAGCCCTAACTAATCCGCTCTTCGTCGTATTCCGATCTGATTCTACTCTATCTCAGATCCGTAGTTCTTGGGAATTCAATCGAAGGCTCTGCTGCTCGCCGCTTGGATTTTTTCTGTCATTTCCTTTTATTCTTGAGTTGTTCTCATCGGATTCTTCATTTTTAGGTTTCAGGAAAGGCGTCGAGGTTTTCTCGAAGTTTAGCATTCGAATTCTCAGCTATACCGGATTTTTGTCACGACTGGCTCTGCAGATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAGAGAGAGCACTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCCCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGTGGGGAGCTTACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTTTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTTAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCAGAACCTTCATTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCGACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAATATGCAATTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCGGGTTCATCTGTTAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATTGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGTTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATCGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGAGGTGCAGCAGCCGATGTTATAA 2844 43.14 MEFSNCRLVFPDKTLALTNPLFVVFRSDSTLSQIRSSWEFNRRLCCSPLGFFLSFPFILELFSSDSSFLGFRKGVEVFSKFSIRILSYTGFLSRLALQIWRNIYWMGEEAAGLAAVTNEPLGRESTSSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYMCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDCCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKEVQQPML 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35731027 35738890 - ClCG10G020950.1 Cla10g01990 283649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01990 947 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 734 IPR013083 -
Cla10g01990 947 Pfam Tify domain binding domain 363 417 IPR032308 -
Cla10g01990 947 Pfam Tify domain binding domain 530 579 IPR032308 -
Cla10g01990 947 MobiDBLite consensus disorder prediction 126 158 - -
Cla10g01990 947 PANTHER AUTOIMMUNE REGULATOR 138 944 - -
Cla10g01990 947 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 831 919 IPR016181 -
Cla10g01990 947 SMART PHD_3 675 732 IPR001965 -
Cla10g01990 947 SMART PHD_3 596 637 IPR001965 -
Cla10g01990 947 ProSiteProfiles Zinc finger PHD-type profile. 673 734 IPR019787 -
Cla10g01990 947 SUPERFAMILY FYVE/PHD zinc finger 674 729 IPR011011 -
Cla10g01990 947 ProSitePatterns Zinc finger PHD-type signature. 676 731 IPR019786 -
Cla10g01990 947 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 656 IPR013083 -
Cla10g01990 947 MobiDBLite consensus disorder prediction 159 185 - -
Cla10g01990 947 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 138 944 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 276 290 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 199 220 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 122 185 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 262 292 - -
Cla10g01990 947 SUPERFAMILY FYVE/PHD zinc finger 592 639 IPR011011 -
Cla10g01990 947 ProSiteProfiles Zinc finger PHD-type profile. 594 639 IPR019787 -
Cla10g01990 947 Gene3D - 778 941 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 199 224 - -
Cla10g01990 947 ProSitePatterns Zinc finger PHD-type signature. 597 636 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01990 Cla-Chr2:34911332 Cla10g01990 Cla-Chr10:35731027 6.28E-44 dispersed
Cla02g02113 Cla-Chr2:36139170 Cla10g01990 Cla-Chr10:35731027 8.39E-06 dispersed
Cla09g00660 Cla-Chr9:6273541 Cla10g01990 Cla-Chr10:35731027 6.15E-40 dispersed
Cla10g01874 Cla-Chr10:34651395 Cla10g01990 Cla-Chr10:35731027 1.07E-13 dispersed
Cla10g01990 Cla-Chr10:35731027 Cla11g01718 Cla-Chr11:30765310 6.26E-37 dispersed
Cla10g01990 Cla-Chr10:35731027 Cla07g00294 Cla-Chr7:3272002 9.74E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01990 - - csv:101207817 1588.93