Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01990 ATGGAGTTTTCAAACTGTCGTCTCGTTTTCCCGGACAAAACCCTAGCCCTAACTAATCCGCTCTTCGTCGTATTCCGATCTGATTCTACTCTATCTCAGATCCGTAGTTCTTGGGAATTCAATCGAAGGCTCTGCTGCTCGCCGCTTGGATTTTTTCTGTCATTTCCTTTTATTCTTGAGTTGTTCTCATCGGATTCTTCATTTTTAGGTTTCAGGAAAGGCGTCGAGGTTTTCTCGAAGTTTAGCATTCGAATTCTCAGCTATACCGGATTTTTGTCACGACTGGCTCTGCAGATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAGAGAGAGCACTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCCCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGTGGGGAGCTTACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTTTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTTAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCAGAACCTTCATTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCGACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAATATGCAATTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCGGGTTCATCTGTTAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATTGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGTTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATCGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGAGGTGCAGCAGCCGATGTTATAA 2844 43.14 MEFSNCRLVFPDKTLALTNPLFVVFRSDSTLSQIRSSWEFNRRLCCSPLGFFLSFPFILELFSSDSSFLGFRKGVEVFSKFSIRILSYTGFLSRLALQIWRNIYWMGEEAAGLAAVTNEPLGRESTSSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYMCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDCCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKEVQQPML 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35731027 35738890 - ClCG10G020950.1 Cla10g01990 283649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01990 947 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 734 IPR013083 -
Cla10g01990 947 Pfam Tify domain binding domain 363 417 IPR032308 -
Cla10g01990 947 Pfam Tify domain binding domain 530 579 IPR032308 -
Cla10g01990 947 MobiDBLite consensus disorder prediction 126 158 - -
Cla10g01990 947 PANTHER AUTOIMMUNE REGULATOR 138 944 - -
Cla10g01990 947 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 831 919 IPR016181 -
Cla10g01990 947 SMART PHD_3 675 732 IPR001965 -
Cla10g01990 947 SMART PHD_3 596 637 IPR001965 -
Cla10g01990 947 ProSiteProfiles Zinc finger PHD-type profile. 673 734 IPR019787 -
Cla10g01990 947 SUPERFAMILY FYVE/PHD zinc finger 674 729 IPR011011 -
Cla10g01990 947 ProSitePatterns Zinc finger PHD-type signature. 676 731 IPR019786 -
Cla10g01990 947 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 656 IPR013083 -
Cla10g01990 947 MobiDBLite consensus disorder prediction 159 185 - -
Cla10g01990 947 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 138 944 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 276 290 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 199 220 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 122 185 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 262 292 - -
Cla10g01990 947 SUPERFAMILY FYVE/PHD zinc finger 592 639 IPR011011 -
Cla10g01990 947 ProSiteProfiles Zinc finger PHD-type profile. 594 639 IPR019787 -
Cla10g01990 947 Gene3D - 778 941 - -
Cla10g01990 947 MobiDBLite consensus disorder prediction 199 224 - -
Cla10g01990 947 ProSitePatterns Zinc finger PHD-type signature. 597 636 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01990 - - - csv:101207817 1588.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01990 Cla-Chr2:34911332 Cla10g01990 Cla-Chr10:35731027 6.28E-44 dispersed
Cla02g02113 Cla-Chr2:36139170 Cla10g01990 Cla-Chr10:35731027 8.39E-06 dispersed
Cla09g00660 Cla-Chr9:6273541 Cla10g01990 Cla-Chr10:35731027 6.15E-40 dispersed
Cla10g01874 Cla-Chr10:34651395 Cla10g01990 Cla-Chr10:35731027 1.07E-13 dispersed
Cla10g01990 Cla-Chr10:35731027 Cla11g01718 Cla-Chr11:30765310 6.26E-37 dispersed
Cla10g01990 Cla-Chr10:35731027 Cla07g00294 Cla-Chr7:3272002 9.74E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01990 . 125 942 PHD Transcription Factor Family AT3G53680 53.8 6.9e-251 864.0
Cla07g00294 . 436 565 PHD Transcription Factor Family AT3G53680 54.6 1.2e-37 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40