Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02000 ATGTCGATATGGGATTTCCATTTCCCAAATTCTTCTCCAAACTACATCAAGCTGTTTTGCTCCCTTCTTCCTCTTCCTTCTTCCTCCCTCTCTTTTTCTCTCTCTTCTCTTGATGTGATTCTCCACTATTTATCTCTCCCCAAAACCCATCAACCTTTACAAAAGAGAAAGAGAACCCAGAAAAACACCATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGCAGTAGTAGCACTGGAGTTAGTTCTCAGCTTCTACCACCGCCGCTGCCGCCGCCTCCACCGCCTCCTCCCCCACCACCCCATGGCGTCGGCGGTGCCAGTTCGATCCGCCCTGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCGATGCCCGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAATACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGGGGTGGGGCCCTACGGAACGTCCCGGTTGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGGCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTCAGTGACTTCGACATAGGTGGTTTCAGCTACGGGGGTGGCCTCTCAGCTGCTGCCACCGCCACCGGTGACCTGAGTTTCCAATTGGGCAACACTACTTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAACCTCCCCAATTTCCCTTCTTGTCCGGGTTAGACCCTTTCGACGGCGGTAGCAGTAGCGGCGGAGAAGGACCCGGACCCGGACCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATGTAAGCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGCTGGAAGACAATTTCTTGGGAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1212 50.74 MSIWDFHFPNSSPNYIKLFCSLLPLPSSSLSFSLSSLDVILHYLSLPKTHQPLQKRKRTQKNTMNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLLPPPLPPPPPPPPPPPHGVGGASSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGGFSYGGGLSAAATATGDLSFQLGNTTLAGGTSIGSLLGFDQQWRLQQQPPQFPFLSGLDPFDGGSSSGGEGPGPGPGWQMRPKLPSSSRNVSQMGNSVKMEETPDQVNNAGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35845261 35848375 - ClCG10G021050.2 Cla10g02000 283659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02000 403 MobiDBLite consensus disorder prediction 185 243 - -
Cla10g02000 403 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Cla10g02000 403 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 399 IPR045174 GO:0003700|GO:0006355
Cla10g02000 403 MobiDBLite consensus disorder prediction 98 118 - -
Cla10g02000 403 MobiDBLite consensus disorder prediction 342 373 - -
Cla10g02000 403 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Cla10g02000 403 MobiDBLite consensus disorder prediction 80 124 - -
Cla10g02000 403 MobiDBLite consensus disorder prediction 202 237 - -
Cla10g02000 403 MobiDBLite consensus disorder prediction 80 97 - -
Cla10g02000 403 MobiDBLite consensus disorder prediction 309 373 - -
Cla10g02000 403 Pfam Dof domain, zinc finger 143 198 IPR003851 GO:0003677|GO:0006355
Cla10g02000 403 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 67 399 - -
Cla10g02000 403 SUPERFAMILY Formin homology 2 domain (FH2 domain) 104 114 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00818 Cla10g02000 CCT
Cla04g00818 Cla10g02000 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01328 Cla-Chr7:30502600 Cla10g02000 Cla-Chr10:35845261 9.57E-35 dispersed
Cla10g02000 Cla-Chr10:35845261 Cla01g01785 Cla-Chr1:32798293 2.55E-33 dispersed
Cla10g02000 Cla-Chr10:35845261 Cla02g01976 Cla-Chr2:34830258 6.76E-44 wgd
Cla10g02000 Cla-Chr10:35845261 Cla04g00818 Cla-Chr4:23231374 1.44E-49 wgd
Cla10g02000 Cla-Chr10:35845261 Cla07g00304 Cla-Chr7:3441324 1.16E-62 wgd
Cla10g02000 Cla-Chr10:35845261 Cla09g01940 Cla-Chr9:36993735 6.39E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61963 PF02701 zf-Dof 4.40E-32 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02000 - - csv:101207082 466.848