Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02012 ATGCAGGATAGAGTTGGTTTAAATGGACACGTTACACTCTATGGATTGGACGAGATTAGAAAAGGCAAACTGCGCCGTCGTACCACAGGTCGCCGTCTCACCTCCGGTCGCCGCACACAGCATCATCCCTCCACGCTTTTATCTGCAGTGGTCCCATCCCGATCAGGCGATGGCAAGGCTTCTCTGACGCTCAAATACTCGCTCCGGCTAGCAAACCTCGAGTTTGGAACGGCGAAATCAAGTCGTTTCGTAGTCAATCCGGCAAGGATTCAGATCGCGCTGGGTGAGTTTTCGTTGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCCAATCCATCACCAAGTAACATAGCCTCAAGTTCCAGTATTATAACCTCCTCTTCTAATGATGCGAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAGATTCTCATGGAAGAAGACATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCTGAGAAATCATTCTATGAGGTCCTTGGAAAAAAATATCCTCCTTCCCCAGAGCCAAATAGATCTCTGGCCGATCAATACAGTGATAGCTTGAATGAAGAACTTTGTGGAGATAGTAGTAATTACCGGAATGGTTACAGTAATACTTCTTATTGTGGTGATGATAACCCTTTTCAAACCGTGAGTGAAGATATACTTCAAATCAGAAGCACTTTAGGTGATACCATTTCTCCATCATCCAATAGTTCCTCAAATAGTATCATTAGCGGGGCTGATGGGTGGGTGGAATTCTCGAATAATACAATTCGAGTTCCTGAGCCTAATAACAGAAGCCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAAATTGTGTCTTGATATTGAGGTAAATGGGTCAGCAACTCAGGGTTTGGATGAGGGAACGAGCCAGGTGTATTTGAAGGCAGCAAGAAAGGATCAGAGGAATATTTTGTCACTTGAATCACGTGGAAGAAAGAACCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTACAGAGTCGACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTCATAGTGCTGGAGAGGGGCATGAACGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAACTAAAAGTGTCTAATGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAGAGAGGTTGTGGATTTGAGAACTCTTTTAATTAGCTGTGCTCAGGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCATTTGGGGATGGAAGCCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTAGAGGCACGCTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGTCCATTTAGAAAGATTTCTAATTTTGCTTCAAACAGGACTATAATGATTGCTGCTGAGAGTGCAACTAAGCTTCATGTCGTAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGATGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGGTTTCGTCCTGCAGAGAGAGTGGAGGAGACAGGTCGTCGTTTGGCAGCCTATGCAGAGAGTTTCAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAACTATTACGGTCGAAGATCTCAATATCGATCAAGATGAGTTCCTAGTCGTTAACTGTTTGTATCGAGCAAAAAATTTGCTTGATGAGAGTGTTGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGATACACAAAATTAGTCCTAACTTATTCATCAGTGGCGTTGTCAATGGAGCATATAATGCTCCTTTCTTTGTTACCCGATTTCGAGAAGCTTTGTTCCATTTTTCTGCTATTTTTGATATGCTTGAAACCGTTGTACCTCGCGAGGATTGGGAGAGAATGCTTTTGGAGAGAGAGATCTTTGGCAGGGAGGCCCTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCCTTTTCATCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTTAACTGTGGAGCTGCTGTTTCAAATTTAAAACCTTGTCTTGAGGAAAGCTCCAATGGCCCATGTTCGTTTGGAGAATCAACAAGGGCTATCAATGTCATTCGCCCTACACCACGGAATTTTGTAGTCACAATGTTGGCAAAATGTAATTTTGATACCTCAGGTTAG 2514 42.84 MQDRVGLNGHVTLYGLDEIRKGKLRRRTTGRRLTSGRRTQHHPSTLLSAVVPSRSGDGKASLTLKYSLRLANLEFGTAKSSRFVVNPARIQIALGEFSLNTIFSHNFQEFDCLLPNPSPSNIASSSSIITSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEPNRSLADQYSDSLNEELCGDSSNYRNGYSNTSYCGDDNPFQTVSEDILQIRSTLGDTISPSSNSSSNSIISGADGWVEFSNNTIRVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLCLDIEVNGSATQGLDEGTSQVYLKAARKDQRNILSLESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLHSAGEGHERLVSFRQELHNAKIKSMLQSGQLKVSNGGRGRRKKQSGKREVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFASNRTIMIAAESATKLHVVDFGILYGFQWPTLIQRLSWRKDGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLDESVATESARNTVLRLIHKISPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFHPEIFERAVEKVNCGAAVSNLKPCLEESSNGPCSFGESTRAINVIRPTPRNFVVTMLAKCNFDTSG 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35930830 35936625 + ClCG10G021200.2 Cla10g02012 283671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02012 837 MobiDBLite consensus disorder prediction 348 373 - -
Cla10g02012 837 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 100 786 IPR005202 -
Cla10g02012 837 ProSiteProfiles GRAS family profile. 436 820 IPR005202 -
Cla10g02012 837 PANTHER SCARECROW-LIKE PROTEIN 9 100 786 - -
Cla10g02012 837 Pfam GRAS domain family 445 779 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g02012 Cla-Chr10:35930830 Cla10g00432 Cla-Chr10:5807527 6.18E-63 dispersed
Cla10g02012 Cla-Chr10:35930830 Cla02g01955 Cla-Chr2:34647663 3.43E-180 wgd
Cla10g02012 Cla-Chr10:35930830 Cla03g00132 Cla-Chr3:1342433 4.24E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61965 PF03514 GRAS 1.50E-105 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02012 - - csv:101205887 1241.1