Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g02042 | ATGGCTGAAGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGCGACAAGCTCCGGGAACATCCCGACCACCACCGTTCCAATTTCCTCCCTTTTTACGACCCTTCTTCTTCCGACTCCTCCAATCGCTTCCAATTTCACCACCATCCCTTTTTCGACCCCCAAATCCCATCCCCTCTTTTACCCGAAATCCATTCTTTCCCAGCTGAGCCTCTCTCCCTTTCCCTTTCCTCTCACCCCTTTCTCGCTTCCCCTATTCCCTCTCCTCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTGAAAGGCTCCAGGTTTCTTAAGCCAGCCCATCACTTGCTACAGGACCTCTGTGATTCTGTTCATTCCTCTTCTTCTTCTCATTCTGCTTTCATCCATGATCCTTCCTCCGATCCCTTCCCCCATTCCCCAATTCTTGACCATCATCCCCTTCCTTCTTCTGATTCTTCTACCCCTCCTCATAAGTCCACCCTTCTTTCAATGCTCGATGAGATTATGACTTGTGCTTATAAAGGTGTTCTGAGCGTTTACAGGAAATATAAGCAGTACTATCAACAAATCCAGGATGTGATGACATCGTTCGAGTACATCTCTGGGCTCGGGAATGCAGCGCCGTATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGAGCAACTTCAATTCAATAAAAAGACTCATGGTGACTACAATCAAAGATCCGTTCAGAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTTCCCGAACGGGCAGTAACTGTTCTTCGTGCTTGGCTGTTTGAACATTTTTTGCATCCTTATCCTTCTGACACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCGATGGTTGAAGAAATATACATGCTTGAAACCAAGCAGCAAACACAAAAGAATTTACATAGAGAAGAGCGAAATGCCAACAGGGCAAACGATCATCATAATCCATCTAACTCCCTCGCAATGGATAACCCTTCTACATCTGCTCAACAAATTCAAGATACTCCTGCCAAACGTGAACCAAATGACATGCCAATGGGAAATCAAGTCGAGTCCATGAACGTATCGTACAACTTGTCGAGCCATCCCCATGTAGGCGCAAACACAAACATTGCAGGCAACAACAGCGGTGGAGTTTCCTTAACTCTTGGTCTTCACCAAAACAATGTCATAGGTGGCTTTTCAGAACCCTTCCCAGTAGGGTTCCCTGTTGCAGGTACTCGACGTTTTGGCCTCGGAATCCAAGGTAACAATGACGGGTACGTAATGGGTGGACATTTTAGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTGA | 1461 | 46.82 | MAEGIESYDHVPQQSRRDKLREHPDHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIPSPLLPEIHSFPAEPLSLSLSSHPFLASPIPSPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHSSSSSHSAFIHDPSSDPFPHSPILDHHPLPSSDSSTPPHKSTLLSMLDEIMTCAYKGVLSVYRKYKQYYQQIQDVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILEQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQTQKNLHREERNANRANDHHNPSNSLAMDNPSTSAQQIQDTPAKREPNDMPMGNQVESMNVSYNLSSHPHVGANTNIAGNNSGGVSLTLGLHQNNVIGGFSEPFPVGFPVAGTRRFGLGIQGNNDGYVMGGHFSRDVLGGQLLHDFVG | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36169958 | 36173584 | - | ClCG10G021520.2 | Cla10g02042 | 283701 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g02042 | 486 | MobiDBLite | consensus disorder prediction | 356 | 381 | - | - | |
Cla10g02042 | 486 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 57 | 446 | - | - | |
Cla10g02042 | 486 | SMART | prehox3 | 98 | 237 | IPR006563 | - | |
Cla10g02042 | 486 | CDD | homeodomain | 266 | 327 | IPR001356 | GO:0003677 | |
Cla10g02042 | 486 | Pfam | Homeobox KN domain | 283 | 322 | IPR008422 | GO:0003677|GO:0006355 | |
Cla10g02042 | 486 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Cla10g02042 | 486 | SMART | HOX_1 | 266 | 330 | IPR001356 | GO:0003677 | |
Cla10g02042 | 486 | MobiDBLite | consensus disorder prediction | 10 | 30 | - | - | |
Cla10g02042 | 486 | SUPERFAMILY | Homeodomain-like | 268 | 333 | IPR009057 | - | |
Cla10g02042 | 486 | MobiDBLite | consensus disorder prediction | 352 | 393 | - | - | |
Cla10g02042 | 486 | MobiDBLite | consensus disorder prediction | 145 | 165 | - | - | |
Cla10g02042 | 486 | Coils | Coil | 337 | 357 | - | - | |
Cla10g02042 | 486 | Pfam | Associated with HOX | 103 | 235 | IPR006563 | - | |
Cla10g02042 | 486 | Gene3D | - | 269 | 331 | - | - | |
Cla10g02042 | 486 | ProSiteProfiles | 'Homeobox' domain profile. | 263 | 326 | IPR001356 | GO:0003677 | |
Cla10g02042 | 486 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 9 | 57 | 446 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla04g00762 | Cla10g02042 | CCT | |
Cla04g00762 | Cla10g02042 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00278 | Cla-Chr3:3372212 | Cla10g02042 | Cla-Chr10:36169958 | 5.44E-71 | dispersed | |
Cla10g02042 | Cla-Chr10:36169958 | Cla11g00386 | Cla-Chr11:4333548 | 1.72E-54 | dispersed | |
Cla10g02042 | Cla-Chr10:36169958 | Cla04g00762 | Cla-Chr4:22705788 | 4.81E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61966 | PF07526 | POX | 2.00E-26 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g02042 | - | - | csv:101221128 | 820.461 |