Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02042 ATGGCTGAAGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGCGACAAGCTCCGGGAACATCCCGACCACCACCGTTCCAATTTCCTCCCTTTTTACGACCCTTCTTCTTCCGACTCCTCCAATCGCTTCCAATTTCACCACCATCCCTTTTTCGACCCCCAAATCCCATCCCCTCTTTTACCCGAAATCCATTCTTTCCCAGCTGAGCCTCTCTCCCTTTCCCTTTCCTCTCACCCCTTTCTCGCTTCCCCTATTCCCTCTCCTCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTGAAAGGCTCCAGGTTTCTTAAGCCAGCCCATCACTTGCTACAGGACCTCTGTGATTCTGTTCATTCCTCTTCTTCTTCTCATTCTGCTTTCATCCATGATCCTTCCTCCGATCCCTTCCCCCATTCCCCAATTCTTGACCATCATCCCCTTCCTTCTTCTGATTCTTCTACCCCTCCTCATAAGTCCACCCTTCTTTCAATGCTCGATGAGATTATGACTTGTGCTTATAAAGGTGTTCTGAGCGTTTACAGGAAATATAAGCAGTACTATCAACAAATCCAGGATGTGATGACATCGTTCGAGTACATCTCTGGGCTCGGGAATGCAGCGCCGTATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGAGCAACTTCAATTCAATAAAAAGACTCATGGTGACTACAATCAAAGATCCGTTCAGAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTTCCCGAACGGGCAGTAACTGTTCTTCGTGCTTGGCTGTTTGAACATTTTTTGCATCCTTATCCTTCTGACACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCGATGGTTGAAGAAATATACATGCTTGAAACCAAGCAGCAAACACAAAAGAATTTACATAGAGAAGAGCGAAATGCCAACAGGGCAAACGATCATCATAATCCATCTAACTCCCTCGCAATGGATAACCCTTCTACATCTGCTCAACAAATTCAAGATACTCCTGCCAAACGTGAACCAAATGACATGCCAATGGGAAATCAAGTCGAGTCCATGAACGTATCGTACAACTTGTCGAGCCATCCCCATGTAGGCGCAAACACAAACATTGCAGGCAACAACAGCGGTGGAGTTTCCTTAACTCTTGGTCTTCACCAAAACAATGTCATAGGTGGCTTTTCAGAACCCTTCCCAGTAGGGTTCCCTGTTGCAGGTACTCGACGTTTTGGCCTCGGAATCCAAGGTAACAATGACGGGTACGTAATGGGTGGACATTTTAGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTGA 1461 46.82 MAEGIESYDHVPQQSRRDKLREHPDHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIPSPLLPEIHSFPAEPLSLSLSSHPFLASPIPSPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHSSSSSHSAFIHDPSSDPFPHSPILDHHPLPSSDSSTPPHKSTLLSMLDEIMTCAYKGVLSVYRKYKQYYQQIQDVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILEQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQTQKNLHREERNANRANDHHNPSNSLAMDNPSTSAQQIQDTPAKREPNDMPMGNQVESMNVSYNLSSHPHVGANTNIAGNNSGGVSLTLGLHQNNVIGGFSEPFPVGFPVAGTRRFGLGIQGNNDGYVMGGHFSRDVLGGQLLHDFVG 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36169958 36173584 - ClCG10G021520.2 Cla10g02042 283701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02042 486 MobiDBLite consensus disorder prediction 356 381 - -
Cla10g02042 486 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 446 - -
Cla10g02042 486 SMART prehox3 98 237 IPR006563 -
Cla10g02042 486 CDD homeodomain 266 327 IPR001356 GO:0003677
Cla10g02042 486 Pfam Homeobox KN domain 283 322 IPR008422 GO:0003677|GO:0006355
Cla10g02042 486 MobiDBLite consensus disorder prediction 1 38 - -
Cla10g02042 486 SMART HOX_1 266 330 IPR001356 GO:0003677
Cla10g02042 486 MobiDBLite consensus disorder prediction 10 30 - -
Cla10g02042 486 SUPERFAMILY Homeodomain-like 268 333 IPR009057 -
Cla10g02042 486 MobiDBLite consensus disorder prediction 352 393 - -
Cla10g02042 486 MobiDBLite consensus disorder prediction 145 165 - -
Cla10g02042 486 Coils Coil 337 357 - -
Cla10g02042 486 Pfam Associated with HOX 103 235 IPR006563 -
Cla10g02042 486 Gene3D - 269 331 - -
Cla10g02042 486 ProSiteProfiles 'Homeobox' domain profile. 263 326 IPR001356 GO:0003677
Cla10g02042 486 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 57 446 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00762 Cla10g02042 CCT
Cla04g00762 Cla10g02042 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00278 Cla-Chr3:3372212 Cla10g02042 Cla-Chr10:36169958 5.44E-71 dispersed
Cla10g02042 Cla-Chr10:36169958 Cla11g00386 Cla-Chr11:4333548 1.72E-54 dispersed
Cla10g02042 Cla-Chr10:36169958 Cla04g00762 Cla-Chr4:22705788 4.81E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61966 PF07526 POX 2.00E-26 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02042 - - csv:101221128 820.461