Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g02055 | ATGGGGCCTCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCCGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGAGGAGGGTTCGTGTTATTCTCAGTTCTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCGGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCCGTGGAGGTTGAAAATGAAAATGGGATAACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCAGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAACATTCTCGGACCAAACGAGGTTGAGTTAACAGAGCAATCTAACGAATCCAACAACGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGAGGGCACCGGTTTCTGAATTTTTTACTCGCTTGTATGGAAGAAAGTAGTTTCGAAACGGTGGAAAATCCGATCGAGGAACTTGCAGAATTTGCAGCTGCAAAAGACCCTCCAGCGAATTGCCTACAGAACATGTGTCGTCCTGATGTCGGGGAAGACGAGGCGTGTATGGGATGGGACCTCTCTGTTGTCAAATGGAAACAAAATTCTGTCAGGAAAACTCATCAAACTGTGGCGTGA | 846 | 47.04 | MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDAEEGSCYSQFFSTNGGSYDEYRFAFVSRPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNESNNASSTTTVAASIPSSDSQSFWRGHRFLNFLLACMEESSFETVENPIEELAEFAAAKDPPANCLQNMCRPDVGEDEACMGWDLSVVKWKQNSVRKTHQTVA | 281 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 36277836 | 36280639 | - | ClCG10G021660.2 | Cla10g02055 | 283714 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g02055 | 281 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270 | |
| Cla10g02055 | 281 | PANTHER | OS01G0850200 PROTEIN | 8 | 215 | - | - | |
| Cla10g02055 | 281 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Cla10g02055 | 281 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 215 | - | - | |
| Cla10g02055 | 281 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cla10g02055 | 281 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 166 | IPR013083 | - | |
| Cla10g02055 | 281 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Cla10g02055 | 281 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270 | |
| Cla10g02055 | 281 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla04g00736 | Cla10g02055 | CCT | |
| Cla04g00736 | Cla10g02055 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g02328 | Cla-Chr1:37074014 | Cla10g02055 | Cla-Chr10:36277836 | 6.12E-19 | dispersed | |
| Cla10g02055 | Cla-Chr10:36277836 | Cla11g01629 | Cla-Chr11:29983374 | 1.30E-11 | dispersed | |
| Cla01g00128 | Cla-Chr1:1224211 | Cla10g02055 | Cla-Chr10:36277836 | 3.93E-11 | transposed | |
| Cla10g02055 | Cla-Chr10:36277836 | Cla11g00617 | Cla-Chr11:7083177 | 3.72E-62 | wgd | |
| Cla10g02055 | Cla-Chr10:36277836 | Cla03g00103 | Cla-Chr3:1069243 | 3.45E-38 | wgd | |
| Cla10g02055 | Cla-Chr10:36277836 | Cla04g00736 | Cla-Chr4:22386705 | 1.18E-48 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g02055 | - | - | csv:101218915 | 394.43 |