Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g02079 | ATGGAGGTCGAGAGAGAAGAAGAAGATGTGAGAGTGGGAGTGAATAGGTTCGAAGAGAGGCAGGCGATCGGGACGGCAGCTCGGAAGGACTACCGAGAGCCGCCCCCGGCGCCCCTGTTCGAGGGCGGAGAGTTAGGTTCATGGTCATTCTACAGGGCTGGGATTGCAGAGTTTGTAGGGAGTTTGTTGTTCCTTTATGTGAGTGTAATGACTGTAATGGGTGTGGCCAAAGCTCCAAATAAGTGTTCCACCGTTGGAGTCCAAGGCATTGCTTGGGCCTTTGGTGGAATCATCTTTGTTCTTGTCTATTGCACGGCTGGTATTTCAGGTGGCCACATAAACCCAGCAGTCACATTGGGGCTATTACTAGCAAGGAAGTTGTCGCTCACAAGGGCAGTTTATTACATTATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGCCGTTGTCAAAGCCTTCGAAAAAGGACCTTTCGAGCTGCTCGGCGGCGGCGCCAACACCGTTAATGAAGGCTACTCTAACACAGCTGCCCTCGGAGCTGAAATCATCGGCACATTTCTGCTTGTTTACACCGTCTTTTCAGCCACCGATGCAAAGCGAAATGCTCGAGATTCCCACGTCCCCATGTTGGCTCCTCTGCCGATTGGGTTTGCGGTGTTTTTGGTGCATTTAGCCACCATTCCGATCACCGGAACTGGCATTAATCCGGCGAGAAGCCTCGGCGCCGCCATTATTTACAACCGTCACCAAGGCTGGCATGACCATGTGAGTTTTCCACAGCCCTTCTCATCTGTTTTCAAAGTTCCGTGGGTGTTTTGGGCAGGGCCGTTCATCGGGGCAGCACTTGCAGCTTTGTACCATCAGACGGTGATCAGGGCCATCCCATTTAAGTCCAAATGA | 900 | 52.56 | MEVEREEEDVRVGVNRFEERQAIGTAARKDYREPPPAPLFEGGELGSWSFYRAGIAEFVGSLLFLYVSVMTVMGVAKAPNKCSTVGVQGIAWAFGGIIFVLVYCTAGISGGHINPAVTLGLLLARKLSLTRAVYYIIMQCLGAICGAAVVKAFEKGPFELLGGGANTVNEGYSNTAALGAEIIGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRHQGWHDHVSFPQPFSSVFKVPWVFWAGPFIGAALAALYHQTVIRAIPFKSK | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36478749 | 36481274 | - | ClCG10G021970.2 | Cla10g02079 | 283738 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g02079 | 299 | SUPERFAMILY | Aquaporin-like | 47 | 292 | IPR023271 | - | |
Cla10g02079 | 299 | Pfam | Major intrinsic protein | 45 | 287 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla10g02079 | 299 | CDD | MIP | 52 | 290 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla10g02079 | 299 | PRINTS | Major intrinsic protein family signature | 52 | 71 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla10g02079 | 299 | PRINTS | Major intrinsic protein family signature | 94 | 118 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla10g02079 | 299 | PRINTS | Major intrinsic protein family signature | 131 | 150 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla10g02079 | 299 | PRINTS | Major intrinsic protein family signature | 180 | 198 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla10g02079 | 299 | PRINTS | Major intrinsic protein family signature | 216 | 238 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla10g02079 | 299 | PANTHER | AQUAPORIN PIP1-4-RELATED | 5 | 299 | - | - | |
Cla10g02079 | 299 | Gene3D | Glycerol uptake facilitator protein. | 37 | 298 | IPR023271 | - | |
Cla10g02079 | 299 | TIGRFAM | MIP: MIP family channel proteins | 56 | 287 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cla10g02079 | 299 | ProSitePatterns | MIP family signature. | 112 | 120 | IPR022357 | - | |
Cla10g02079 | 299 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 5 | 299 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla07g00381 | Cla-Chr7:4593508 | Cla10g02079 | Cla-Chr10:36478749 | 9.00E-144 | dispersed | |
Cla10g02079 | Cla-Chr10:36478749 | Cla04g00883 | Cla-Chr4:23822564 | 4.44E-127 | dispersed | |
Cla10g02079 | Cla-Chr10:36478749 | Cla07g00380 | Cla-Chr7:4586834 | 8.92E-159 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g02079 | K09872 | - | pvy:116133740 | 471.855 |