Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02079 ATGGAGGTCGAGAGAGAAGAAGAAGATGTGAGAGTGGGAGTGAATAGGTTCGAAGAGAGGCAGGCGATCGGGACGGCAGCTCGGAAGGACTACCGAGAGCCGCCCCCGGCGCCCCTGTTCGAGGGCGGAGAGTTAGGTTCATGGTCATTCTACAGGGCTGGGATTGCAGAGTTTGTAGGGAGTTTGTTGTTCCTTTATGTGAGTGTAATGACTGTAATGGGTGTGGCCAAAGCTCCAAATAAGTGTTCCACCGTTGGAGTCCAAGGCATTGCTTGGGCCTTTGGTGGAATCATCTTTGTTCTTGTCTATTGCACGGCTGGTATTTCAGGTGGCCACATAAACCCAGCAGTCACATTGGGGCTATTACTAGCAAGGAAGTTGTCGCTCACAAGGGCAGTTTATTACATTATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGCCGTTGTCAAAGCCTTCGAAAAAGGACCTTTCGAGCTGCTCGGCGGCGGCGCCAACACCGTTAATGAAGGCTACTCTAACACAGCTGCCCTCGGAGCTGAAATCATCGGCACATTTCTGCTTGTTTACACCGTCTTTTCAGCCACCGATGCAAAGCGAAATGCTCGAGATTCCCACGTCCCCATGTTGGCTCCTCTGCCGATTGGGTTTGCGGTGTTTTTGGTGCATTTAGCCACCATTCCGATCACCGGAACTGGCATTAATCCGGCGAGAAGCCTCGGCGCCGCCATTATTTACAACCGTCACCAAGGCTGGCATGACCATGTGAGTTTTCCACAGCCCTTCTCATCTGTTTTCAAAGTTCCGTGGGTGTTTTGGGCAGGGCCGTTCATCGGGGCAGCACTTGCAGCTTTGTACCATCAGACGGTGATCAGGGCCATCCCATTTAAGTCCAAATGA 900 52.56 MEVEREEEDVRVGVNRFEERQAIGTAARKDYREPPPAPLFEGGELGSWSFYRAGIAEFVGSLLFLYVSVMTVMGVAKAPNKCSTVGVQGIAWAFGGIIFVLVYCTAGISGGHINPAVTLGLLLARKLSLTRAVYYIIMQCLGAICGAAVVKAFEKGPFELLGGGANTVNEGYSNTAALGAEIIGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRHQGWHDHVSFPQPFSSVFKVPWVFWAGPFIGAALAALYHQTVIRAIPFKSK 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36478749 36481274 - ClCG10G021970.2 Cla10g02079 283738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02079 299 SUPERFAMILY Aquaporin-like 47 292 IPR023271 -
Cla10g02079 299 Pfam Major intrinsic protein 45 287 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g02079 299 CDD MIP 52 290 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g02079 299 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g02079 299 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g02079 299 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g02079 299 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g02079 299 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g02079 299 PANTHER AQUAPORIN PIP1-4-RELATED 5 299 - -
Cla10g02079 299 Gene3D Glycerol uptake facilitator protein. 37 298 IPR023271 -
Cla10g02079 299 TIGRFAM MIP: MIP family channel proteins 56 287 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g02079 299 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Cla10g02079 299 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 299 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00381 Cla-Chr7:4593508 Cla10g02079 Cla-Chr10:36478749 9.00E-144 dispersed
Cla10g02079 Cla-Chr10:36478749 Cla04g00883 Cla-Chr4:23822564 4.44E-127 dispersed
Cla10g02079 Cla-Chr10:36478749 Cla07g00380 Cla-Chr7:4586834 8.92E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02079 K09872 - pvy:116133740 471.855