Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02088 ATGGATTTTGAACAAGGAACGTCGATCTTGCAAAACGGCGTCGTCAAGGGTTCGCTGAGGCACGCTCGAACGGCTCACAACATGTCGTCGTCATCGCTTCGTAAAAAGTCCGATTTGACCCTCGTCTCCAAGGTTCGTTTGGGTTGCCTCAGGCAGTTGCTTGTGAATCTTCAGGAGGTCGTTTTTGGAACCAGGATTTGGATTCTTTTTCCGGCGGTGCCGTTGGCTGTTTTGGCCGACTCTTTCGGCTTCGCAAGACCATGGGTTTTCGTTCTTAGCTTGCTGGGCCTTGCTCCACTCGCTGAACGCCTTAGCTTTCTGACCGAACAAATCTCACACTTCACCGGCCATACAGTTGGTGGGTTGCTAAATGCGACATGTGGGAATGCGACGGAGCTAATCGTAGCAGTTTTTGCACTTAGCAAGGATAAGATTAAGTTGGTGAAGTATTCTCTTTTGGGATCCGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCCCACTCTTCCTTGGTGGCATCGTCAATCTTAACAAAGAACAAACCTACGACCGAAGGCAAGCTGAGGTGAACTCGCACATGTTGTTGTTGGCGCTTTTGTGCTATTCCCTCCCGATGTTGTTCCCTTACGCTGGAGAATCGGCTGACGTGGGGGGAGGAGCTGGTTCCCTGCGATTGTCTAGAGCCGGTAGTATAGTAATGCTGGTGGCTTATGTCGCTTACTTGATCTTTCACCTCTGGACTCATCGCCAATTATTTGAAGCAGACAAGGAACTGGACGTATACGACGACGTAGTGGAAGAAGGTCCGGTGATTGGAAAATGGAGCGCAATAGCGTGGTTGGTGGTTGTTACCCTTCTCATTGCTTTGTTATCTGAGTACGTGGTCGCCACAATTGAGGATGCATCAGAAACTTGGGGCTTATCTGTTGCATTCCTTGGCATAATCTTGCTACCACTCGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATAACTTTAGGCGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTATGTGTAATTGTTGCTTGGGTTTTGGGAATGAATATGGATCTAAATTTTAATATCCTCGAAACTGCTTCCCTTGCTCTTTCAATATTGGCTTCATCATCCATTTTACAGGTTTCCGAACCTGACCATTTTATTCGAGCTGAGGGAAAAGCAAAACTGGGCCCGAAAAATATTGGGCCCAAGCCCAACAAGCTCCCAGACGTACCAAATCAACGAAAATATCTGACTGCCAACTGGCATCCACCTGTCAGTCGACGATTTCGGATTCAGATTTACTCAGTTCGGTTCGGGACTATGCGGGAAGAAAAGAAGCCAGTAATTGTATGGCGGAATATCGGAAAGCTTGAAGCCTCTGATCGTCGAGTCTTCAACACCACGGACTGTGAACCACTGTGGAATAGCAACAAGCAATTTGGCACCAGTGGTGGTAGTGATAATGATGGTGATGGAACTAGCTGTAAATTTGCCTGCATTACTGTCGTAGAAAAGCGAAACCGGAAGGAATTCCTGCCGACGTTCGCTCAGTTGCTTAAGCATCCATTATCAATTCTGGCTTTGGTGCACAGAGAAGCAACGCTCTTCGCTGCTGGCGCCGTATCGGGGGCGGCCGCGAAGACTGCGACAGCTCCGCTTGAGCGAATCAAGCTTATTATGCAGGTTATAGCCGCGCACTATTTGCCTCCAGCAGCTTCGTTTTTTCGTCAATTGATTCTCAAAGCAAAACTCATGGAGCAAGAATTGCGCAAGAAGGAGCTAAGAAGTCTATTGGCTTTATCGAGGTATGATAAGAACTGGAAGCACCTTAATTGGTTATACGTATCATACCATATAGTGCTATCCAGCTCTTTGCCTATGAAAATTTCAAGGGGAGAAGATGGAGAACTTTCTGTGATTGGAAGACTCGCTGCTGGTGCATGCGCTGGCATGACATCCACCTTTATGACATATCCATTAGATGTTTTGAGGTTGCGTATGGCAGTTGACCCTGGGTTTCGAACGGCATCTGAGATTGCCTTAAGTATGCTACGAGAGGAAGGCATTACATCTTACTACAGTGGTCTTGGACCATCCCTTTTTGGCATAGCTCCTTACATTGCCGTGAACTTTTGCATTTTTGACTTGGTAAAAAAGTCTTTGCCAGAGGAAGCTCAAAGGAGAACTGAAACATCTTTATTCACAGCCTTGCTTTCGGCTTCCCTAGCTACACTCATGTGCTATCCTTTGGACACTGTGAGAAGACAGATGCAAATGAAGGGTACACCTTACAATACAGTTTTCGATGCTTTTGCAGGTATATGGGCTGGTGATGGATTTGTTGGATTCTACAGGGGCTTGCTGCCCAACTTCTTGAAGAATTTACCAAGCAGCAGCATCAAGCTTACCACATATGACTTTGTCAAGCGTCTTATTGAAACTAGTGAAAATGAGTACCAGAGAATCATTGAGGAAAATCGCGAAAAGCTTAACCAAAAGTTCACTGATTAA 2559 45.99 MDFEQGTSILQNGVVKGSLRHARTAHNMSSSSLRKKSDLTLVSKVRLGCLRQLLVNLQEVVFGTRIWILFPAVPLAVLADSFGFARPWVFVLSLLGLAPLAERLSFLTEQISHFTGHTVGGLLNATCGNATELIVAVFALSKDKIKLVKYSLLGSVLSNLLLVLGTPLFLGGIVNLNKEQTYDRRQAEVNSHMLLLALLCYSLPMLFPYAGESADVGGGAGSLRLSRAGSIVMLVAYVAYLIFHLWTHRQLFEADKELDVYDDVVEEGPVIGKWSAIAWLVVVTLLIALLSEYVVATIEDASETWGLSVAFLGIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWVLGMNMDLNFNILETASLALSILASSSILQVSEPDHFIRAEGKAKLGPKNIGPKPNKLPDVPNQRKYLTANWHPPVSRRFRIQIYSVRFGTMREEKKPVIVWRNIGKLEASDRRVFNTTDCEPLWNSNKQFGTSGGSDNDGDGTSCKFACITVVEKRNRKEFLPTFAQLLKHPLSILALVHREATLFAAGAVSGAAAKTATAPLERIKLIMQVIAAHYLPPAASFFRQLILKAKLMEQELRKKELRSLLALSRYDKNWKHLNWLYVSYHIVLSSSLPMKISRGEDGELSVIGRLAAGACAGMTSTFMTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFGIAPYIAVNFCIFDLVKKSLPEEAQRRTETSLFTALLSASLATLMCYPLDTVRRQMQMKGTPYNTVFDAFAGIWAGDGFVGFYRGLLPNFLKNLPSSSIKLTTYDFVKRLIETSENEYQRIIEENREKLNQKFTD 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36577096 36591408 - ClCG10G022100.2 Cla10g02088 283747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02088 852 PRINTS Mitochondrial carrier protein signature 752 774 IPR002067 GO:0055085
Cla10g02088 852 PRINTS Mitochondrial carrier protein signature 564 578 IPR002067 GO:0055085
Cla10g02088 852 PRINTS Mitochondrial carrier protein signature 668 686 IPR002067 GO:0055085
Cla10g02088 852 PRINTS Mitochondrial carrier protein signature 551 564 IPR002067 GO:0055085
Cla10g02088 852 PRINTS Mitochondrial carrier protein signature 709 727 IPR002067 GO:0055085
Cla10g02088 852 TIGRFAM cax: calcium/proton exchanger 71 395 IPR004798 GO:0006816|GO:0015369
Cla10g02088 852 Gene3D Mitochondrial carrier domain 547 828 IPR023395 -
Cla10g02088 852 Gene3D - 260 407 IPR044880 -
Cla10g02088 852 Gene3D - 115 257 IPR044880 -
Cla10g02088 852 SUPERFAMILY Mitochondrial carrier 550 824 IPR023395 -
Cla10g02088 852 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 12 730 - -
Cla10g02088 852 TIGRFAM caca2: calcium/proton exchanger 52 395 - -
Cla10g02088 852 ProSiteProfiles Solute carrier (Solcar) repeat profile. 743 827 IPR018108 -
Cla10g02088 852 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016021|GO:0055085
Cla10g02088 852 Pfam Sodium/calcium exchanger protein 276 391 IPR004837 GO:0016021|GO:0055085
Cla10g02088 852 Pfam Mitochondrial carrier protein 748 830 IPR018108 -
Cla10g02088 852 Pfam Mitochondrial carrier protein 652 738 IPR018108 -
Cla10g02088 852 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 12 730 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cla10g02088 852 Coils Coil 591 611 - -
Cla10g02088 852 Coils Coil 821 848 - -
Cla10g02088 852 ProSiteProfiles Solute carrier (Solcar) repeat profile. 653 736 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00705 Cla10g02088 CCT
Cla04g00705 Cla10g02088 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g02088 Cla-Chr10:36577096 Cla05g00130 Cla-Chr5:1221981 6.20E-06 dispersed
Cla02g00337 Cla-Chr2:3289846 Cla10g02088 Cla-Chr10:36577096 1.14E-17 transposed
Cla02g01035 Cla-Chr2:20991062 Cla10g02088 Cla-Chr10:36577096 5.36E-92 transposed
Cla04g00706 Cla-Chr4:21981847 Cla10g02088 Cla-Chr10:36577096 1.08E-110 transposed
Cla07g01351 Cla-Chr7:30671629 Cla10g02088 Cla-Chr10:36577096 3.47E-85 transposed
Cla10g00392 Cla-Chr10:5330239 Cla10g02088 Cla-Chr10:36577096 2.15E-93 transposed
Cla10g02088 Cla-Chr10:36577096 Cla03g00075 Cla-Chr3:795633 2.04E-121 wgd
Cla10g02088 Cla-Chr10:36577096 Cla04g00705 Cla-Chr4:21971987 9.35E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02088 K07300 - csv:101213176 604.364