Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02093 ATGTTGTGCTTTTCCATAGATCTCCTTTCAGTTTCCGCTATGGAAGAAATTCCCTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTGAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACACAGTTGTGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGTGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG 765 45.49 MLCFSIDLLSVSAMEEIPSTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEHSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36624060 36628891 + ClCG10G022160.2 Cla10g02093 283752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02093 254 Pfam PHD-finger 201 249 IPR019787 -
Cla10g02093 254 MobiDBLite consensus disorder prediction 177 191 - -
Cla10g02093 254 CDD PHD_AL_plant 200 250 IPR044104 -
Cla10g02093 254 MobiDBLite consensus disorder prediction 160 176 - -
Cla10g02093 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Cla10g02093 254 PANTHER CPG BINDING PROTEIN 19 253 IPR045104 GO:0006355|GO:0042393
Cla10g02093 254 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 19 253 - -
Cla10g02093 254 MobiDBLite consensus disorder prediction 149 191 - -
Cla10g02093 254 SMART PHD_3 200 248 IPR001965 -
Cla10g02093 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 248 IPR013083 -
Cla10g02093 254 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Cla10g02093 254 Pfam Alfin 24 149 IPR021998 GO:0006355|GO:0042393
Cla10g02093 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02093 - - - csv:101211970 464.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00714 Cla-Chr10:11292447 Cla10g02093 Cla-Chr10:36624060 2.38E-94 dispersed
Cla10g02093 Cla-Chr10:36624060 Cla11g00146 Cla-Chr11:1751974 1.14E-65 dispersed
Cla10g02093 Cla-Chr10:36624060 Cla07g00398 Cla-Chr7:4960689 1.02E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00714 . 99 350 Alfin-like Transcription Factor Family AT1G14510 84.1 4.1e-114 407.9
Cla08g00996 . 9 212 Alfin-like Transcription Factor Family AT1G14510 66.8 2.0e-81 299.3
Cla10g02093 . 14 251 Alfin-like Transcription Factor Family AT1G14510 59.3 5.5e-79 291.2
Cla07g00398 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 1.4e-77 286.6
Cla09g00078 . 10 324 Alfin-like Transcription Factor Family AT1G14510 51.1 2.3e-77 285.8
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT5G26210 72.8 3.6e-94 341.7
Cla11g00146 CCT 494 867 Alfin-like Transcription Factor Family AT5G26210 51.3 6.2e-94 340.9
Cla08g00996 . 1 212 Alfin-like Transcription Factor Family AT5G26210 67.1 1.3e-88 323.2
Cla09g00078 . 1 326 Alfin-like Transcription Factor Family AT5G26210 50.3 1.4e-82 303.1
Cla07g00398 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.7e-80 296.2
Cla10g02093 . 14 253 Alfin-like Transcription Factor Family AT5G26210 57.1 8.6e-80 293.9
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT3G42790 72.0 1.8e-90 329.3
Cla08g00996 . 1 212 Alfin-like Transcription Factor Family AT3G42790 66.8 1.5e-84 309.7
Cla07g00398 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 3.4e-81 298.5
Cla10g02093 . 22 253 Alfin-like Transcription Factor Family AT3G42790 58.3 9.4e-79 290.4
Cla07g00398 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.0 1.2e-112 402.9
Cla10g02093 . 19 254 Alfin-like Transcription Factor Family AT5G05610 75.5 4.3e-105 377.9
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT5G05610 63.2 3.2e-84 308.5
Cla08g00996 . 8 212 Alfin-like Transcription Factor Family AT5G05610 62.2 8.5e-77 283.9
Cla07g00398 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.6 1.3e-95 346.3
Cla10g02093 . 57 254 Alfin-like Transcription Factor Family AT3G11200 76.2 2.5e-86 315.5
Cla09g00078 . 84 326 Alfin-like Transcription Factor Family AT3G11200 56.5 1.5e-70 263.1
Cla10g00714 . 142 352 Alfin-like Transcription Factor Family AT3G11200 64.2 7.4e-70 260.8
Cla08g00996 . 44 212 Alfin-like Transcription Factor Family AT3G11200 61.4 7.4e-62 234.2
Cla10g00714 . 99 259 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Cla08g00996 . 1 159 Alfin-like Transcription Factor Family AT2G02470 74.8 3.0e-64 242.3
Cla10g02093 . 14 169 Alfin-like Transcription Factor Family AT2G02470 65.4 4.8e-54 208.4
Cla11g00146 CCT 494 734 Alfin-like Transcription Factor Family AT2G02470 50.2 1.1e-53 207.2
Cla07g00398 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.1e-53 207.2
Cla09g00078 . 5 200 Alfin-like Transcription Factor Family AT2G02470 58.1 1.5e-52 203.4
Cla08g00996 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 7.9e-70 260.4
Cla10g00714 . 101 270 Alfin-like Transcription Factor Family AT5G20510 71.5 8.2e-67 250.4
Cla11g00146 CCT 494 736 Alfin-like Transcription Factor Family AT5G20510 50.8 1.1e-58 223.4
Cla09g00078 . 1 204 Alfin-like Transcription Factor Family AT5G20510 57.5 9.4e-55 210.3
Cla07g00398 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.1e-52 203.4
Cla10g02093 . 21 171 Alfin-like Transcription Factor Family AT5G20510 61.8 3.7e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61969 PF12165 Alfin 7.20E-67 No_clan Cla TF