Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02093 ATGTTGTGCTTTTCCATAGATCTCCTTTCAGTTTCCGCTATGGAAGAAATTCCCTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTGAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACACAGTTGTGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGTGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG 765 45.49 MLCFSIDLLSVSAMEEIPSTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEHSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36624060 36628891 + ClCG10G022160.2 Cla10g02093 283752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02093 254 Pfam PHD-finger 201 249 IPR019787 -
Cla10g02093 254 MobiDBLite consensus disorder prediction 177 191 - -
Cla10g02093 254 CDD PHD_AL_plant 200 250 IPR044104 -
Cla10g02093 254 MobiDBLite consensus disorder prediction 160 176 - -
Cla10g02093 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Cla10g02093 254 PANTHER CPG BINDING PROTEIN 19 253 IPR045104 GO:0006355|GO:0042393
Cla10g02093 254 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 19 253 - -
Cla10g02093 254 MobiDBLite consensus disorder prediction 149 191 - -
Cla10g02093 254 SMART PHD_3 200 248 IPR001965 -
Cla10g02093 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 248 IPR013083 -
Cla10g02093 254 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Cla10g02093 254 Pfam Alfin 24 149 IPR021998 GO:0006355|GO:0042393
Cla10g02093 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00714 Cla-Chr10:11292447 Cla10g02093 Cla-Chr10:36624060 2.38E-94 dispersed
Cla10g02093 Cla-Chr10:36624060 Cla11g00146 Cla-Chr11:1751974 1.14E-65 dispersed
Cla10g02093 Cla-Chr10:36624060 Cla07g00398 Cla-Chr7:4960689 1.02E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61969 PF12165 Alfin 7.20E-67 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02093 - - csv:101211970 464.536