Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02113 ATGAACAACACCATCTCGCCGGGAAACATGGCCGCCGGAACCCCATCATGGCTGAACACCGGCGACAACTCTTGGCAAATTACAGCCTCCACTCTCGTCGGACTTCAGAGCATGCCTGGGCTTGTGATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTTAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCATCGTCGGTTACAGAATGGCGTTTGGCGATCAGTTGATTCCTCTGTGGGGAAAAGGAATTCCAGCTGTGTCTCAAAGTTACTTAATAAACCAAGCCAATATCCCTGAGAGTGGCTACATAAGCAACAATGGAAGTGTAACGCCAAGAATTGAACCCAATATTCCGATGGCTTCGCTTGTGTATTTCCAATTTACTTTTGCTGCGATTACTGTGATTTTACTTGGTGGGTCTGTTCTTGCAAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTCGGAGCATACAGCGTTTGGGGCGGAGGGTTTCTGTTTAAATGGGGATTAATTGATTACTCCGGCGGCTATGTGATTCATCTTTCGTCTGGAATTGCTGGTTTAACAGCGGCTTATTGGGTTGGGCCGAGGATAAAGAGTGACAGAGAGAGGTTTCCCCCGAATAACGTACTGCTGATGTTGGCCGGAGCGGGGCTGTTGTGGATGGGGTGGTCGGGATTTAACGGCGGAGCGCCGCACTCGGCGAACGTGGTGGCGTCGATAGCTGTGCTGAATACGAACGTGAGTGCGGCGATGAGTCTGCTGGTTTGGACCATATTGGATGTGTTTTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACTCCTGGCGCTGGAGTTGTGCAGACGTGGGCGGCTATCATAATGGGAGTTCTAGCTGGGAGTGTTCCATGGCTATCCATGATGGTTCTTCATAAAAAATTGAGTTTCTTGCAGAAGGCTGATGACACGCTTGGTGTATTTCACACGCACGCAGTGGCGGGATTGATGGGCGGGCTTTTAACTGGGCTTTTGGCGGAGCCCACTCTATGCGATCTATACCTACCGGTCACCGGCACACGCGGCGCCTTCTACGGCAAGAACGGCGGCGTTCAGTTCCTGAAACAACTGGCCGGATCCATCTTCATCATAGGATGGAACATCGTGTCAACCACCATAATCCTCCTCTTTATTCGGCTGTTTATGCCCTTAAGAATGCCCGATGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCTAGACGGCACGGCAATGCGGCCGCCGCCAATATGGAAGAGGGAACTGGCTCGCCTTATATCAATGGTGCTCGAGGTGTCATCATCGAGTTGTAA 1467 51.19 MNNTISPGNMAAGTPSWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLIPLWGKGIPAVSQSYLINQANIPESGYISNNGSVTPRIEPNIPMASLVYFQFTFAAITVILLGGSVLARMNIKAWMAFVPLWVIFSYTVGAYSVWGGGFLFKWGLIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAAMSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVLAGSVPWLSMMVLHKKLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPVTGTRGAFYGKNGGVQFLKQLAGSIFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAAANMEEGTGSPYINGARGVIIEL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36819904 36825687 - ClCG10G022370.1 Cla10g02113 283772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02113 488 PANTHER AMMONIUM TRANSPORTER 2 10 485 - -
Cla10g02113 488 SUPERFAMILY Ammonium transporter 17 429 - -
Cla10g02113 488 TIGRFAM amt: ammonium transporter 22 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cla10g02113 488 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cla10g02113 488 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cla10g02113 488 Gene3D Ammonium transporter AmtB like domains 2 450 IPR029020 -
Cla10g02113 488 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005887
Cla10g02113 488 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005887
Cla10g02113 488 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005887
Cla10g02113 488 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005887
Cla10g02113 488 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005887
Cla10g02113 488 PANTHER AMMONIUM TRANSPORTER MEP2 10 485 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01306 Cla-Chr8:25962297 Cla10g02113 Cla-Chr10:36819904 2.86E-177 dispersed
Cla10g02113 Cla-Chr10:36819904 Cla11g00998 Cla-Chr11:19217089 2.94E-19 dispersed
Cla10g02113 Cla-Chr10:36819904 Cla06g00721 Cla-Chr6:9209585 2.20E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02113 K03320 - csv:101207321 903.279