Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02125 ATGAATAACATAAATCAAACGATAAATACACTCGCTGGCGGATCTTCTGACAACAGAACCAATAATTTCGGTATGGAAGTTCCGAAATTCAAGTCTCTTCAACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTAAATTCCCCTCTCCTTTTCTCATTTGGTGTTTTTCCTTCTCCTACTTCTGGTGCCTTAAATTTGAGAAATGATTATGAGGAGGGTGAGCAGCAAGAAATGAAGGCAGATGTGAAAAATTACTCTGCTTCTTCGTTTAACCCACAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACACCACTGAATCCGAACGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCAGAATTTGTTACTACAGAAATGGCGGCAGCTGAATCAAAGCCAATTTCTCAGCTACCAATTTACAACAGAGAACAGAAAAAATCAGAGAACGATGGATATAACTGGAGAAAATACGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACTTTCCCAAGTTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGACGGCCAAATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCGATTTACGATCCATCTTCGGCGGATTCCGCCCTGCTGCAGGAGGATTCCTCCGTCTCGGTGGGGGATGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAACGAGGGATATTGTGAGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACCAGCGAAATTGACATACTGCCGGATGGTTATAGATGGAGGAAATACGGACAAAAGGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGAGAGCGGCTAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCCCGTGGCAGCGGTGGCAGTGGCTATAATGCCATCAACCGACCTACACCGACCAACATTCCAATGCCGGTGAGGCCGTCTGCCATCGGTAGTCATTCTTTCCCGGCAAATTTTCCGGCCACGTTCCAGCCGGCAAATTTAGCCATGTCAGAAATTGGAGCAGAAGCATCATCATTCCCATTTCAAACATCACAAGGAGTGCCTCCAAGTTTCCAAGTTTCAGGATTTGGATCCGCAGCCAAGGAAGAAGCCAGAGATGACATATACTTCATCAACTCATTTCTATCTTAG 1428 45.45 MNNINQTINTLAGGSSDNRTNNFGMEVPKFKSLQPPPFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTSGALNLRNDYEEGEQQEMKADVKNYSASSFNPQTGSSVSSYFQSSSSNVTPLNPNGLSCDESGAKSEFVTTEMAAAESKPISQLPIYNREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAIYDPSSADSALLQEDSSVSVGDEEFEPNSPFSNSVDDNENEPEAKRWKGENENEGYCEGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGSGYNAINRPTPTNIPMPVRPSAIGSHSFPANFPATFQPANLAMSEIGAEASSFPFQTSQGVPPSFQVSGFGSAAKEEARDDIYFINSFLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36911290 36913963 + ClCG10G022500.1 Cla10g02125 283784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02125 475 MobiDBLite consensus disorder prediction 219 298 - -
Cla10g02125 475 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 17 458 - -
Cla10g02125 475 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g02125 475 Gene3D WRKY domain 156 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g02125 475 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g02125 475 MobiDBLite consensus disorder prediction 276 298 - -
Cla10g02125 475 MobiDBLite consensus disorder prediction 228 275 - -
Cla10g02125 475 SMART WRKY_cls 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g02125 475 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g02125 475 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g02125 475 Pfam WRKY DNA -binding domain 170 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g02125 475 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g02125 475 MobiDBLite consensus disorder prediction 1 24 - -
Cla10g02125 475 Gene3D WRKY domain 305 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g02125 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 458 IPR044810 GO:0003700
Cla10g02125 475 SUPERFAMILY WRKY DNA-binding domain 166 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00015 Cla-Chr3:176047 Cla10g02125 Cla-Chr10:36911290 6.03E-115 dispersed
Cla10g02125 Cla-Chr10:36911290 Cla03g01024 Cla-Chr3:19476497 1.01E-13 dispersed
Cla10g02125 Cla-Chr10:36911290 Cla11g00430 Cla-Chr11:4957420 3.69E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61971 PF03106 WRKY 9.50E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02125 K13424 - csv:101205651 801.971