Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g02161 ATGTCACCTGTGCAAACGCTGCTACTTTTCGCTTTCTTCTACGCTGGAATCGACACAACCGGTTCTTTCACTGATCCCCGCGATTCTGCGGCGCTGGAATCCCTGAAAAACGAATGGCAAAATACACCACCAAGCTGGGGAGCATCAAATGATCCGTGTGGAGCTCCCTGGGAAGGAGTGGCTTGCATCAATTCAAGAGTCACGGCACTGAGATTATCAACTATGGGCCTGAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGACCGAACTAAAATCATTGGACCTTTCGTTCAATAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACAGAGTTTGAGTATCTTGATCCTGGCTGGGTGTGGCTTCAGTGGCAGTATTCCTGAACAACTGGGCAATCTTTCCAATCTATCCTTCTTGGCTTTAAACTCTAACAACTTCACTGGTTCCATACCGCCATCTCTGGGGAAACTCTCCAATCTCTATTGGCTGGACCTGGCAGATAATCAATTGACAGGTAGTCTCCCAGTCTCGACTTCCCAATCTTCTGGTTTGGACCTCCTTCTGAAGGCTAAACATTTTCATTTCAACAAAAACCAGTTGTCAGGTTCCATTTCACCTAAACTTTTTAGCTCTGAGATGGTATTAATACACATATTATTTGATGGAAATAATTTTTCTGGGAATATCCCACCGACACTGGGACTTGTTAAGACCCTTGAGGTTCTTCGCCTAGATCGGAATTCTCTGACAGGAACTGTCCCATCAAATCTGAACAACCTAACAAATATCAATGAATTGAATTTAGCCAACAATAAGTTGACGGGTCCACTGCCAAACTTAACTCAAATGAGCTCACTAAATTACTTGGACCTTAGTAACAACTCATTTGATTCATCAGAAGCACCAGAATGGTTCTCAAATCTACAATCTCTCACCACTCTGATCATTGAATTTGGGTCAATTCGAGGACCTGTGCCAGAAGGAGTGTTTAGCTTACCACAAATACAACAAATAAAATTGAAGAATAATGCATTTAGTGACACATTTAATATGGGTGACAAAGTCAGCGAACAGTTGCAGCTCGTTGATTTGCAAAATAACAATATTTCCCATTTTACCCTTGGTTCAAGATACACCAAAACTTTGATCACTGATGCTACCCTCTCAAATACAAACTACTGCCAAGTTCAAAATCAACCGGTGAAACCCTATTCAACCAGCCTTGCCAGTTGTTTAAGTAAGTCATGTTCTCCAGATGAGAAGTTAAGTCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGAATTGTCCAATGTGACTTTGTTTCATTCTTTGGAAATGAGCCTTTGGAAAAAACTGGACCTTACACCGGGTTCAGTTTCTATTCAAAACCCTTTCTTCAATGTTGATGATTATCTTCAGATGCAAATTGCACTTTTTCCACCAGACGGAAAGTATTTTAATAGGTCAGATATTCAGAGGATTGGGTTTGACTTGAGCAATCAAACCTACAAACCTCCCCCAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTACGGTTTTGCAGGCACGGCTAGGGGAACTTCAATCAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCATTCTAGGCCTCATCGGAGTTGGAATATATGCAATTCGGCAAAAGAAACGTGCAGAAAAGGCCATCGGGATGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGCAATGATAGTGGGGGCGCACCACAATTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGGTAGGATCTGGAGGATATGGCAAGGTATATAGAGGAATGCTTGTGGATGGACAAGCAGTTGCGATCAAAAGAGCTCAGCAAGGATCAATGCAAGGTGGCCTTGAGTTCAAGACGGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGAACTCTGAGAGATAGCCTATCTGGAAAATCTGGTATCAATCTTGACTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCCAGAGGATTGACTTACTTGCATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAATATTTTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGCGAAAAGGGACACGTTTCTACTCAAGTTAAAGGGACATTGGGTTATTTGGATCCCGAATATTACATGACTCAACAATTGACGGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTATGTTGGAATTATTAACGGCTAAGCTGCCTATCGAGAAAGGAAAGTATGTAGTTCGTGAGGTGCGCATGTTGATGAATAAAAGTGAAGAAGAATATTATGGTCTGAAGCAGATAGTGGATGTAACCATAATAAATAATACAACGACCATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCAATGCGTTGAAGAATCAGCTGTAGATCGTCCCACAATGAGTGAAGTGGTCAAGGCAATTGAGAGTATTTTGCAGAATGATGGAATTAATACGAACACAACATCTGCATCCTCGTCTGCAACTGACTTTGGGGCTTCCAGAACCGCTCCTAGGCATCCCTATAATGATTCTATACCAAAAAAGGATGCTAATGACAGCAATGCTTTTGATTACAGTGGTGGATACACTCATTCGACAAAAGAAAGACTCTCCTTCCCCTCAACTCCTTTTGTTATAACTTATAAGGAGATGGAAACTTATGTTGGTTATGCATTCGATCATCATTCAGCATATCGTCGGATTGTCATTTGGCATGTTACTGGAGTAGTGAATACTAGCATCTAG 3006 41.85 MSPVQTLLLFAFFYAGIDTTGSFTDPRDSAALESLKNEWQNTPPSWGASNDPCGAPWEGVACINSRVTALRLSTMGLKGKLGGDIGGLTELKSLDLSFNKDLTGSISPALGDLQSLSILILAGCGFSGSIPEQLGNLSNLSFLALNSNNFTGSIPPSLGKLSNLYWLDLADNQLTGSLPVSTSQSSGLDLLLKAKHFHFNKNQLSGSISPKLFSSEMVLIHILFDGNNFSGNIPPTLGLVKTLEVLRLDRNSLTGTVPSNLNNLTNINELNLANNKLTGPLPNLTQMSSLNYLDLSNNSFDSSEAPEWFSNLQSLTTLIIEFGSIRGPVPEGVFSLPQIQQIKLKNNAFSDTFNMGDKVSEQLQLVDLQNNNISHFTLGSRYTKTLITDATLSNTNYCQVQNQPVKPYSTSLASCLSKSCSPDEKLSPQSCECAYPFEGTLYFRAPSFRELSNVTLFHSLEMSLWKKLDLTPGSVSIQNPFFNVDDYLQMQIALFPPDGKYFNRSDIQRIGFDLSNQTYKPPPEFGPFYFIASPYGFAGTARGTSISPGVIIGVAIGCAFLILGLIGVGIYAIRQKKRAEKAIGMSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEVGSGGYGKVYRGMLVDGQAVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKSEEEYYGLKQIVDVTIINNTTTIIGLGRFLELAMQCVEESAVDRPTMSEVVKAIESILQNDGINTNTTSASSSATDFGASRTAPRHPYNDSIPKKDANDSNAFDYSGGYTHSTKERLSFPSTPFVITYKEMETYVGYAFDHHSAYRRIVIWHVTGVVNTSI 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37221640 37231722 + ClCG10G022900.1 Cla10g02161 283820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g02161 1001 CDD STKc_IRAK 629 897 - -
Cla10g02161 1001 Gene3D Ribonuclease Inhibitor 187 403 IPR032675 -
Cla10g02161 1001 ProSiteProfiles Protein kinase domain profile. 623 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g02161 1001 SUPERFAMILY Protein kinase-like (PK-like) 608 908 IPR011009 -
Cla10g02161 1001 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Cla10g02161 1001 PANTHER LRR RECEPTOR-LIKE KINASE 1 930 - -
Cla10g02161 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Cla10g02161 1001 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524
Cla10g02161 1001 MobiDBLite consensus disorder prediction 905 919 - -
Cla10g02161 1001 MobiDBLite consensus disorder prediction 905 939 - -
Cla10g02161 1001 Gene3D Transferase(Phosphotransferase) domain 1 699 923 - -
Cla10g02161 1001 SUPERFAMILY L domain-like 43 404 - -
Cla10g02161 1001 SMART serkin_6 623 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g02161 1001 Gene3D Phosphorylase Kinase; domain 1 597 698 - -
Cla10g02161 1001 Pfam Protein tyrosine and serine/threonine kinase 625 893 IPR001245 GO:0004672|GO:0006468
Cla10g02161 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 930 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g02161 Cla-Chr10:37221640 Cla06g00736 Cla-Chr6:9562383 6.66E-18 dispersed
Cla02g00002 Cla-Chr2:51609 Cla10g02161 Cla-Chr10:37221640 0 transposed
Cla02g01928 Cla-Chr2:34430284 Cla10g02161 Cla-Chr10:37221640 3.10E-72 transposed
Cla05g00157 Cla-Chr5:1448122 Cla10g02161 Cla-Chr10:37221640 8.15E-64 transposed
Cla10g01257 Cla-Chr10:27428139 Cla10g02161 Cla-Chr10:37221640 0 transposed
Cla10g02161 Cla-Chr10:37221640 Cla04g00632 Cla-Chr4:20628995 3.27E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80903 PF07714 PK_Tyr_Ser-Thr 9.10E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g02161 - - csv:101220026 1742.24