Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g00003 | ATGGGAAGTCCTTTTCCTTGTTGTTTGTTCACTGCATCCTTGCGTGCTGGTATCCAATCCAAACACTGTGAATTCTGTGCTGGGGTTGTGTTGAATTGTGGTGAACGTTTAGAAATGGATGAAAATGGTGGGATAAAGTTGAGTGGAATCCGGCAGATTGTGAGGCTGAAAGAGACTCTCCAACATTGGCAAGGCGTCACAGTTTGCCCCAAATCCAAAGCAGCAGCAGCCCATGAAAATGGAAGCCAAAATCAAAATCATAATCATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACAAATGTGTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGGTATTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCCACCAGCTATCTTAGTCATTCCGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATACCGGCGGGCTCACTTTCCCATGCGAGATCGAAACATTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGGTCAACAATCAATAACTTCCTCATATTCTCTTTTGTTCGCTGAAGTTCTTAACTATTCTATTAGCATTATGTTATGA | 672 | 45.68 | MGSPFPCCLFTASLRAGIQSKHCEFCAGVVLNCGERLEMDENGGIKLSGIRQIVRLKETLQHWQGVTVCPKSKAAAAHENGSQNQNHNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDDHTPGQQSITSSYSLLFAEVLNYSISIML | 223 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 46472 | 47185 | - | ClCG11G000020.1 | Cla11g00003 | 283825 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g00003 | 223 | Pfam | Auxin responsive protein | 113 | 184 | IPR003676 | GO:0009733 | |
| Cla11g00003 | 223 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 44 | 199 | IPR003676 | GO:0009733 | |
| Cla11g00003 | 223 | PANTHER | BNAA02G05090D PROTEIN | 44 | 199 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g00996 | Cla-Chr4:25069234 | Cla11g00003 | Cla-Chr11:46472 | 2.24E-20 | dispersed | |
| Cla09g00158 | Cla-Chr9:1639142 | Cla11g00003 | Cla-Chr11:46472 | 8.58E-23 | dispersed | |
| Cla10g01792 | Cla-Chr10:33843083 | Cla11g00003 | Cla-Chr11:46472 | 7.69E-16 | dispersed | |
| Cla11g00003 | Cla-Chr11:46472 | Cla01g01969 | Cla-Chr1:34329877 | 1.28E-17 | dispersed | |
| Cla11g00358 | Cla-Chr11:3996581 | Cla11g00003 | Cla-Chr11:46472 | 1.08E-17 | dispersed | |
| Cla11g00003 | Cla-Chr11:46472 | Cla11g00357 | Cla-Chr11:3972188 | 2.25E-21 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g00003 | K14488 | - | csv:101207913 | 318.931 |