Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00012 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCACCATAACAATAATAACAATAACAACAGCAGCAACAACAACAAGAAGCATGTCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATAGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCAGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 918 50.76 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 134411 135328 + ClCG11G000100.1 Cla11g00012 283834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00012 305 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Cla11g00012 305 SUPERFAMILY Homeodomain-like 223 291 IPR009057 -
Cla11g00012 305 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 230 286 IPR006455 -
Cla11g00012 305 Gene3D - 220 292 - -
Cla11g00012 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 292 - -
Cla11g00012 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 30 292 - -
Cla11g00012 305 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
Cla11g00012 305 MobiDBLite consensus disorder prediction 201 221 - -
Cla11g00012 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00012 - - - bhj:120068944 527.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01807 Cla-Chr1:32993107 Cla11g00012 Cla-Chr11:134411 3.58E-63 dispersed
Cla01g01913 Cla-Chr1:33858466 Cla11g00012 Cla-Chr11:134411 8.74E-52 dispersed
Cla04g01022 Cla-Chr4:25332463 Cla11g00012 Cla-Chr11:134411 8.55E-40 dispersed
Cla05g02443 Cla-Chr5:35886866 Cla11g00012 Cla-Chr11:134411 4.42E-46 dispersed
Cla09g01783 Cla-Chr9:35222422 Cla11g00012 Cla-Chr11:134411 2.24E-48 dispersed
Cla09g01784 Cla-Chr9:35237504 Cla11g00012 Cla-Chr11:134411 2.94E-23 dispersed
Cla10g01433 Cla-Chr10:29446793 Cla11g00012 Cla-Chr11:134411 4.32E-54 dispersed
Cla11g00012 Cla-Chr11:134411 Cla08g01483 Cla-Chr8:27702836 7.07E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1234 . Blo03g00280 Bda06g00184 . . . . . . . . . . . . . . . . . . . . . Cla11g00012 Cam11g0009 Cec11g0010 Cco11g0011 Clacu11g0158 Cmu11g0008 Cre11g0510 . . . . . . . . . . . . . . . Bma12g00035 . . . . . . . Cpe01g01712 . . . . . . . . . . . . . . . . . . Cme10g01673
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00822 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.9e-41 166.4
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.6e-51 200.3
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 9.0e-55 211.1
Cla01g01913 CCT,ECH 135 341 ZF-HD Transcription Factor Family AT2G18350 52.9 3.3e-50 195.7
Cla10g01433 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 4.0e-51 198.7
Cla09g01783 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.2e-51 198.4
Cla10g01433 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cla09g01783 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 3.0e-58 222.6
Cla09g01783 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.9e-51 199.5
Cla10g01433 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.3e-48 189.9
Cla09g01783 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.6e-51 200.3
Cla10g00822 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.9e-41 166.4
Cla09g01783 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.9e-51 199.5
Cla10g01433 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.3e-48 189.9
Cla01g01913 CCT,ECH 135 341 ZF-HD Transcription Factor Family AT2G18350 52.9 3.3e-50 195.7
Cla09g01783 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cla10g01433 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 4.0e-51 198.7
Cla09g01783 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.2e-51 198.4
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 9.0e-55 211.1
Cla10g01433 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cla09g01783 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 3.0e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61975 PF04770 ZF-HD_dimer 3.10E-29 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla11g00012 Cla_Chr11 FPKM 8.358271 7.935983 15.341434 11.903582 10.256265 11.962176 10.473585 15.24774 14.584866 14.772129