Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla11g00012 | ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCACCATAACAATAATAACAATAACAACAGCAGCAACAACAACAAGAAGCATGTCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATAGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCAGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA | 918 | 50.76 | MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 134411 | 135328 | + | ClCG11G000100.1 | Cla11g00012 | 283834 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla11g00012 | 305 | Pfam | ZF-HD protein dimerisation region | 83 | 135 | IPR006456 | - | |
| Cla11g00012 | 305 | SUPERFAMILY | Homeodomain-like | 223 | 291 | IPR009057 | - | |
| Cla11g00012 | 305 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 230 | 286 | IPR006455 | - | |
| Cla11g00012 | 305 | Gene3D | - | 220 | 292 | - | - | |
| Cla11g00012 | 305 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 30 | 292 | - | - | |
| Cla11g00012 | 305 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 30 | 292 | - | - | |
| Cla11g00012 | 305 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 84 | 135 | IPR006456 | - | |
| Cla11g00012 | 305 | MobiDBLite | consensus disorder prediction | 201 | 221 | - | - | |
| Cla11g00012 | 305 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 85 | 134 | IPR006456 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01807 | Cla-Chr1:32993107 | Cla11g00012 | Cla-Chr11:134411 | 3.58E-63 | dispersed | |
| Cla01g01913 | Cla-Chr1:33858466 | Cla11g00012 | Cla-Chr11:134411 | 8.74E-52 | dispersed | |
| Cla04g01022 | Cla-Chr4:25332463 | Cla11g00012 | Cla-Chr11:134411 | 8.55E-40 | dispersed | |
| Cla05g02443 | Cla-Chr5:35886866 | Cla11g00012 | Cla-Chr11:134411 | 4.42E-46 | dispersed | |
| Cla09g01783 | Cla-Chr9:35222422 | Cla11g00012 | Cla-Chr11:134411 | 2.24E-48 | dispersed | |
| Cla09g01784 | Cla-Chr9:35237504 | Cla11g00012 | Cla-Chr11:134411 | 2.94E-23 | dispersed | |
| Cla10g01433 | Cla-Chr10:29446793 | Cla11g00012 | Cla-Chr11:134411 | 4.32E-54 | dispersed | |
| Cla11g00012 | Cla-Chr11:134411 | Cla08g01483 | Cla-Chr8:27702836 | 7.07E-60 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61975 | PF04770 | ZF-HD_dimer | 3.10E-29 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla11g00012 | - | - | bhj:120068944 | 527.709 |