Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00012 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCACCATAACAATAATAACAATAACAACAGCAGCAACAACAACAAGAAGCATGTCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATAGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCAGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 918 50.76 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN 305
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 134411 135328 + ClCG11G000100.1 Cla11g00012 283834
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00012 305 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Cla11g00012 305 SUPERFAMILY Homeodomain-like 223 291 IPR009057 -
Cla11g00012 305 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 230 286 IPR006455 -
Cla11g00012 305 Gene3D - 220 292 - -
Cla11g00012 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 292 - -
Cla11g00012 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 30 292 - -
Cla11g00012 305 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
Cla11g00012 305 MobiDBLite consensus disorder prediction 201 221 - -
Cla11g00012 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01807 Cla-Chr1:32993107 Cla11g00012 Cla-Chr11:134411 3.58E-63 dispersed
Cla01g01913 Cla-Chr1:33858466 Cla11g00012 Cla-Chr11:134411 8.74E-52 dispersed
Cla04g01022 Cla-Chr4:25332463 Cla11g00012 Cla-Chr11:134411 8.55E-40 dispersed
Cla05g02443 Cla-Chr5:35886866 Cla11g00012 Cla-Chr11:134411 4.42E-46 dispersed
Cla09g01783 Cla-Chr9:35222422 Cla11g00012 Cla-Chr11:134411 2.24E-48 dispersed
Cla09g01784 Cla-Chr9:35237504 Cla11g00012 Cla-Chr11:134411 2.94E-23 dispersed
Cla10g01433 Cla-Chr10:29446793 Cla11g00012 Cla-Chr11:134411 4.32E-54 dispersed
Cla11g00012 Cla-Chr11:134411 Cla08g01483 Cla-Chr8:27702836 7.07E-60 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61975 PF04770 ZF-HD_dimer 3.10E-29 No_clan Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00012 - - bhj:120068944 527.709