Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla11g00019 ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGCGCCGAGAGGGCACGTAAGTTTCGAAAACGAGTCACTATCGCTGTGGTCTCGGCCTCTGTGATCCTCCTCCTCGTTGCTGCCGCTGTGTTCGTCCAGGTCTCCTCCTCCTCCAAGTCCACCACCAAAAATGGCGATAGCAAGAGTAGTGGCAACTCTAAACAACCCGTGCCACCCGACACGAAACAAGTGTCGCGCATCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTAAAAGATGGCGTCCACACGGATCCTGATTCCTCGGACCCGAAAGACCTCATCAAGCTGGCAATCTCGGCTGCGGCGGATGAGGTCAAATCTGCAGTGAAAAAGGCGTCGGGGTTCAACTTCGCGACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCTGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAATAACTGGCTTAGTGCGGTGATGTCGTATCATGAAACTTGTGTTGATGGGTTCCCAGAGGGGAAGATGAGGACAGAAATGGAGAAGGCAGTGAAGGCTGGAAAGGAACTCACCAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTCTTCTCCACGTTCGAGATGCCTGAGGGAGCTGCAACACGACGTCGTCTCATGGCCAATGATGGGGTGCCAACTTGGATGGATAGCAATGAGCGAAGGATGTTGAAGGGCGCTTCTGCTGGGGTTAAGCCCAAGCCTAACGTTGTGGTCGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAATGAAGCCTTGGCCAAGATGCCTGCCAAATATGATGGACGGTATGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACGGTGGTGATTACGAAAAAGATGGCGAATGTTACAATGTATGGAGATGGTTCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGAGGGCTTCTTGGGGCAAGGCATGGGATTCAGAAACACAGCGGGTCCTGAAAAGCACCAAGCCGTAGCAGCGAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGCCGGTTCGAGGGGTACCAGGACACGTTATACGCCCAAGCCCATCGCCAGTTCTATAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCTGCCATTTTCCAAAACTGCAACATGATGCTCAGAAAGCCCTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGACTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAAATTTTGCCCGACAAGACGTTGGAGCCTGTGAAGTCCCAATTCAAAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGATATCATTCATCCCGATGGCTGGATGCCTTGGGAAGGAGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCCGGGTACAAGGTGATTGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCCTCCGCTCCTGTTCATGTCGGCCTATTTTGA 1785 50.53 MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLLVAAAVFVQVSSSSKSTTKNGDSKSSGNSKQPVPPDTKQVSRIEKMITMICNSTDYKGKCESTLKDGVHTDPDSSDPKDLIKLAISAAADEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTAKTTPDLNNWLSAVMSYHETCVDGFPEGKMRTEMEKAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANDGVPTWMDSNERRMLKGASAGVKPKPNVVVAKDGSGDFKTINEALAKMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMLRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESSSAPVHVGLF 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 260639 262646 + ClCG11G000200.1 Cla11g00019 283841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla11g00019 594 Coils Coil 154 174 - -
Cla11g00019 594 MobiDBLite consensus disorder prediction 51 76 - -
Cla11g00019 594 CDD PMEI-like_3 87 237 - -
Cla11g00019 594 Gene3D - 278 593 IPR012334 -
Cla11g00019 594 PANTHER PECTINESTERASE 14 592 - -
Cla11g00019 594 Pfam Plant invertase/pectin methylesterase inhibitor 83 231 IPR006501 GO:0004857
Cla11g00019 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 235 IPR035513 -
Cla11g00019 594 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Cla11g00019 594 TIGRFAM PME_inhib: pectinesterase inhibitor domain 81 235 IPR006501 GO:0004857
Cla11g00019 594 SMART PMEI_2 79 231 IPR006501 GO:0004857
Cla11g00019 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 236 IPR035513 -
Cla11g00019 594 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 592 - -
Cla11g00019 594 SUPERFAMILY Pectin lyase-like 280 578 IPR011050 -
Cla11g00019 594 MobiDBLite consensus disorder prediction 51 73 - -
Cla11g00019 594 Pfam Pectinesterase 284 578 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00700 Cla-Chr1:8217239 Cla11g00019 Cla-Chr11:260639 2.76E-36 dispersed
Cla05g00670 Cla-Chr5:6218084 Cla11g00019 Cla-Chr11:260639 1.72E-172 dispersed
Cla11g00019 Cla-Chr11:260639 Cla09g00131 Cla-Chr9:1312134 4.90E-143 dispersed
Cla11g00019 Cla-Chr11:260639 Cla06g00463 Cla-Chr6:5642876 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla11g00019 - - csv:101211510 1046.96